Experiment ID: 2543

Field Description
nameurban transit system microbial communities differ by surface type and interaction with humans and the environment (5069760) - gpt-5
proj_id5069760
sraprjna301589
date_of_upload17/03/2026 17:30
doi10.1128/msystems.00018-16
modelgpt-5
sample_groups_version18
dbbact_id195
dbbact_linkhttps://dbbact.org/exp_info/195
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
na0.615385
boston0.500000
human contact0.315789
indoor0.285714
surface0.285714
LOWER IN subway0.181818
subway0.166667
outdoor0.166667
LOWER IN outdoor0.166667
LOWER IN human contact0.153846
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN subway1.000000
subway0.500000
outdoor0.500000
na0.500000
indoor0.500000
LOWER IN outdoor0.500000
boston0.333333
LOWER IN human contact0.333333
human contact0.333333
surface0.166667
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
boston1.000000
united states of america1.000000
mbta1.000000
surface1.000000
na0.800000
train car0.700000
touchscreen0.300000
seat0.300000
passenger seating0.300000
seat back0.300000
grip0.300000
vertical pole0.300000
horizontal pole0.300000
human contact0.300000
handrail0.300000
indoor0.200000
automated teller machine0.200000
subway0.100000
laboratory environment0.100000
outdoor0.100000
ticketing machine0.100000
LOWER IN train car0.100000
LOWER IN built environment0.100000
LOWER IN public transit system0.100000
LOWER IN grip0.100000
LOWER IN vertical pole0.100000
LOWER IN horizontal pole0.100000
LOWER IN human contact0.100000
LOWER IN handrail0.100000
LOWER IN seat0.100000
LOWER IN passenger seating0.100000
LOWER IN seat back0.100000
built environment0.100000
public transit system0.100000
LOWER IN subway0.100000
LOWER IN laboratory environment0.100000
LOWER IN outdoor0.100000
LOWER IN ticketing machine0.100000
LOWER IN touchscreen0.100000
Number of experiments associating the term to the sequence
TermScore
subway1.000000
laboratory environment1.000000
outdoor1.000000
ticketing machine1.000000
touchscreen1.000000
LOWER IN train car1.000000
LOWER IN built environment1.000000
LOWER IN public transit system1.000000
boston1.000000
united states of america1.000000
mbta1.000000
surface1.000000
seat1.000000
passenger seating1.000000
seat back1.000000
LOWER IN grip1.000000
LOWER IN vertical pole1.000000
LOWER IN horizontal pole1.000000
LOWER IN human contact1.000000
LOWER IN handrail1.000000
train car1.000000
na1.000000
indoor1.000000
automated teller machine1.000000
grip1.000000
vertical pole1.000000
horizontal pole1.000000
human contact1.000000
handrail1.000000
LOWER IN seat1.000000
LOWER IN passenger seating1.000000
LOWER IN seat back1.000000
built environment1.000000
public transit system1.000000
LOWER IN subway1.000000
LOWER IN laboratory environment1.000000
LOWER IN outdoor1.000000
LOWER IN ticketing machine1.000000
LOWER IN touchscreen1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2543gpt-5Touchscreen surface samples (Boston MBTA, 16S amplicon) (dominant surface, united states of america, indoor, na, mbta, boston, touchscreen, automated teller machine)2026-03-17v41 / 8pendingNo
2543gpt-5Train chair surface samples (seats and seat backs; Boston MBTA, 16S amplicon) (dominant seat, surface, seat back, united states of america, train car, na, mbta, passenger seating, boston)2026-03-17v41 / 10pendingNo
2543gpt-5Train holding surface samples (grips, horizontal and vertical poles; Boston MBTA, 16S amplicon) (dominant grip, vertical pole, horizontal pole, surface, united states of america, train car, na, mbta, human contact, boston, handrail)2026-03-17v41 / 14pendingNo
2543gpt-5Train interior surfaces vs public station touchscreens (environmental context effect) ( high in train car built environment public transit system compared to subway laboratory environment outdoor ticketing machine touchscreen in boston united states of america mbta surface )2026-03-17v41 / 33pendingNo
2543gpt-5High-contact handholds vs seats within train cars ( high in grip vertical pole horizontal pole human contact handrail compared to seat passenger seating seat back in surface united states of america train car na mbta boston )2026-03-17v41 / 82pendingNo
2543gpt-5Train holding surface samples (grips, horizontal and vertical poles; Boston MBTA, 16S amplicon) (common grip, vertical pole, horizontal pole, surface, united states of america, train car, na, mbta, human contact, boston, handrail)2026-03-17v41 / 83pendingNo
2543gpt-5Train chair surface samples (seats and seat backs; Boston MBTA, 16S amplicon) (common seat, surface, seat back, united states of america, train car, na, mbta, passenger seating, boston)2026-03-17v41 / 182pendingNo
2543gpt-5Touchscreen surface samples (Boston MBTA, 16S amplicon) (common surface, united states of america, indoor, na, mbta, boston, touchscreen, automated teller machine)2026-03-17v41 / 424pendingNo
2543gpt-5High-contact handholds vs seats within train cars ( high in seat passenger seating seat back compared to grip vertical pole horizontal pole human contact handrail in surface united states of america train car na mbta boston )2026-03-17v41 / 979pendingNo
2543gpt-5Train interior surfaces vs public station touchscreens (environmental context effect) ( high in subway laboratory environment outdoor ticketing machine touchscreen compared to train car built environment public transit system in boston united states of america mbta surface )2026-03-17v41 / 2157pendingNo

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