Experiment ID: 2542

Field Description
nameamphibian gut microbiota shifts differentially in community structure but converges on habitat-specific predicted functions (5171763) - gpt-5
proj_id5171763
sraprjna320968
date_of_upload17/03/2026 17:25
doi10.1038/ncomms13699
modelgpt-5
sample_groups_version18
dbbact_id149
dbbact_linkhttps://dbbact.org/exp_info/149
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
digestive tract0.666667
larva0.666667
bonn0.666667
stream0.500000
amphibian larval stage0.500000
salamandra salamandra0.400000
field0.375000
pond0.181818
LOWER IN field0.166667
stomach0.111111
germany0.076923
intestine0.062500
Fraction of dbbact annotations with this term covered by the query
TermScore
field0.500000
digestive tract0.500000
larva0.500000
bonn0.500000
LOWER IN field0.500000
stream0.333333
amphibian larval stage0.333333
salamandra salamandra0.250000
pond0.100000
stomach0.058824
germany0.040000
intestine0.032258
Fraction of annotations for the query sequences containing the term
TermScore
intestine1.000000
salamandra salamandra1.000000
forst1.000000
stream1.000000
amphibian larval stage1.000000
pond1.000000
digestive tract1.000000
stomach1.000000
germany1.000000
larva1.000000
bonn1.000000
experimental enclosure0.700000
reciprocal transfer0.700000
first batch0.400000
second batch0.400000
field0.300000
LOWER IN first batch0.200000
LOWER IN second batch0.200000
LOWER IN experimental enclosure0.100000
LOWER IN reciprocal transfer0.100000
LOWER IN field0.100000
Number of experiments associating the term to the sequence
TermScore
field1.000000
LOWER IN experimental enclosure1.000000
LOWER IN first batch1.000000
LOWER IN reciprocal transfer1.000000
LOWER IN second batch1.000000
intestine1.000000
salamandra salamandra1.000000
forst1.000000
stream1.000000
amphibian larval stage1.000000
pond1.000000
digestive tract1.000000
stomach1.000000
germany1.000000
larva1.000000
bonn1.000000
experimental enclosure1.000000
first batch1.000000
reciprocal transfer1.000000
second batch1.000000
LOWER IN field1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2542gpt-5First vs second reciprocal transfer batches (batch effect and temporal replicate) ( high in first batch compared to second batch in intestine salamandra salamandra forst stream amphibian larval stage pond digestive tract experimental enclosure stomach germany reciprocal transfer larva bonn )2026-03-17v41 / 10pendingNo
2542gpt-5Field survey salamander gut samples (pond and stream habitats) (dominant intestine, salamandra salamandra, forst, stream, amphibian larval stage, pond, digestive tract, stomach, germany, larva, field, bonn)2026-03-17v41 / 14pendingNo
2542gpt-5First vs second reciprocal transfer batches (batch effect and temporal replicate) ( high in second batch compared to first batch in intestine salamandra salamandra forst stream amphibian larval stage pond digestive tract experimental enclosure stomach germany reciprocal transfer larva bonn )2026-03-17v41 / 15pendingNo
2542gpt-5Reciprocal transfer experiment salamander gut samples (first transfer batch) (dominant intestine, salamandra salamandra, forst, stream, amphibian larval stage, pond, digestive tract, first batch, experimental enclosure, stomach, germany, reciprocal transfer, larva, bonn)2026-03-17v41 / 22pendingNo
2542gpt-5Reciprocal transfer experiment salamander gut samples (second transfer batch) (dominant intestine, salamandra salamandra, forst, second batch, stream, amphibian larval stage, pond, digestive tract, experimental enclosure, stomach, germany, reciprocal transfer, larva, bonn)2026-03-17v41 / 23pendingNo
2542gpt-5Field survey salamander gut samples (pond and stream habitats) (common intestine, salamandra salamandra, forst, stream, amphibian larval stage, pond, digestive tract, stomach, germany, larva, field, bonn)2026-03-17v41 / 57pendingNo
2542gpt-5Reciprocal transfer experiment salamander gut samples (first transfer batch) (common intestine, salamandra salamandra, forst, stream, amphibian larval stage, pond, digestive tract, first batch, experimental enclosure, stomach, germany, reciprocal transfer, larva, bonn)2026-03-17v41 / 82pendingNo
2542gpt-5Reciprocal transfer experiment salamander gut samples (second transfer batch) (common intestine, salamandra salamandra, forst, second batch, stream, amphibian larval stage, pond, digestive tract, experimental enclosure, stomach, germany, reciprocal transfer, larva, bonn)2026-03-17v41 / 89pendingNo
2542gpt-5Field survey vs laboratory reciprocal transfer (all transfers combined) ( high in experimental enclosure first batch reciprocal transfer second batch compared to field in intestine salamandra salamandra forst stream amphibian larval stage pond digestive tract stomach germany larva bonn )2026-03-17v41 / 383pendingNo
2542gpt-5Field survey vs laboratory reciprocal transfer (all transfers combined) ( high in field compared to experimental enclosure first batch reciprocal transfer second batch in intestine salamandra salamandra forst stream amphibian larval stage pond digestive tract stomach germany larva bonn )2026-03-17v41 / 915pendingNo

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