Experiment ID: 2505

Field Description
nameantibiotic affects the gut microbiota composition and expression of genes related to lipid metabolism and myofiber types in skeletal muscle of piglets (7568366) - gpt-5
proj_id7568366
srasrp130427
date_of_upload17/03/2026 16:25
doi10.1186/s12917-020-02592-0
modelgpt-5
sample_groups_version18
dbbact_id700
dbbact_linkhttps://dbbact.org/exp_info/700
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
sus scrofa domesticus0.666667
antimicrobial treatment0.620690
tylosin phosphate0.523810
post-weaning0.500000
LOWER IN tylosin phosphate0.230769
LOWER IN antimicrobial treatment0.230769
belgium0.200000
day 00.153846
sus scrofa0.111111
colon0.080000
LOWER IN colon0.071429
LOWER IN caecum0.068966
farm0.045455
caecum0.038462
LOWER IN control0.008824
control0.008802
feces0.004484
Fraction of dbbact annotations with this term covered by the query
TermScore
antimicrobial treatment1.000000
sus scrofa domesticus0.500000
tylosin phosphate0.500000
LOWER IN tylosin phosphate0.500000
LOWER IN antimicrobial treatment0.500000
post-weaning0.333333
day 00.333333
belgium0.111111
sus scrofa0.058824
LOWER IN colon0.055556
LOWER IN caecum0.052632
colon0.043478
farm0.023256
caecum0.020000
LOWER IN control0.004545
control0.004444
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
sus scrofa domesticus1.000000
farm1.000000
sus scrofa1.000000
municipality of ghent1.000000
post-weaning1.000000
belgium1.000000
day 390.900000
tylosin phosphate0.550000
colon0.500000
caecum0.500000
control0.450000
antimicrobial treatment0.450000
treatment0.450000
LOWER IN treatment0.150000
LOWER IN tylosin phosphate0.150000
LOWER IN antimicrobial treatment0.150000
LOWER IN control0.150000
feces0.100000
day 00.100000
LOWER IN caecum0.100000
LOWER IN colon0.100000
Number of experiments associating the term to the sequence
TermScore
sus scrofa domesticus1.000000
farm1.000000
sus scrofa1.000000
colon1.000000
municipality of ghent1.000000
day 391.000000
post-weaning1.000000
control1.000000
belgium1.000000
antimicrobial treatment1.000000
tylosin phosphate1.000000
treatment1.000000
feces1.000000
day 01.000000
caecum1.000000
LOWER IN treatment1.000000
LOWER IN tylosin phosphate1.000000
LOWER IN antimicrobial treatment1.000000
LOWER IN caecum1.000000
LOWER IN control1.000000
LOWER IN colon1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2505gpt-5Site-specific antibiotic impact at Day 39: caecum vs colon (both treated) ( high in caecum compared to colon in sus scrofa domesticus farm sus scrofa antimicrobial treatment tylosin phosphate municipality of ghent day 39 post-weaning treatment belgium )2026-03-17v31 / 6pendingNo
2505gpt-5Antibiotics vs control in piglet caecum at Day 39 (treatment effect within site and time) ( high in treatment tylosin phosphate antimicrobial treatment compared to control in sus scrofa domesticus farm sus scrofa municipality of ghent caecum day 39 post-weaning belgium )2026-03-17v31 / 7pendingNo
2505gpt-5Baseline site differences at Day 39: caecum vs colon (controls only) ( high in caecum compared to colon in sus scrofa domesticus farm sus scrofa municipality of ghent day 39 post-weaning control belgium )2026-03-17v31 / 11pendingNo
2505gpt-5Antibiotics vs control in piglet colon at Day 39 (treatment effect within site and time) ( high in treatment tylosin phosphate antimicrobial treatment compared to control in sus scrofa domesticus farm sus scrofa colon municipality of ghent day 39 post-weaning belgium )2026-03-17v31 / 14pendingNo
2505gpt-5Antibiotic-treated piglet fecal samples (Day 0, 16S amplicon) + Control piglet fecal samples (Day 0, 16S amplicon) (dominant sus scrofa domesticus, farm, sus scrofa, tylosin phosphate, municipality of ghent, feces, post-weaning, day 0, belgium)2026-03-17v31 / 18pendingNo
2505gpt-5Control piglet caecum samples (Day 39, 16S amplicon) (dominant sus scrofa domesticus, farm, sus scrofa, municipality of ghent, caecum, day 39, post-weaning, control, belgium)2026-03-17v31 / 19pendingNo
2505gpt-5Control piglet colon samples (Day 39, 16S amplicon) (dominant sus scrofa domesticus, farm, sus scrofa, colon, municipality of ghent, day 39, post-weaning, control, belgium)2026-03-17v31 / 21pendingNo
2505gpt-5Antibiotic-treated piglet colon samples (Day 39, 16S amplicon) (dominant sus scrofa domesticus, farm, antimicrobial treatment, sus scrofa, colon, tylosin phosphate, municipality of ghent, day 39, post-weaning, treatment, belgium)2026-03-17v31 / 23pendingNo
2505gpt-5Antibiotic-treated piglet caecum samples (Day 39, 16S amplicon) (dominant sus scrofa domesticus, farm, antimicrobial treatment, sus scrofa, tylosin phosphate, municipality of ghent, caecum, day 39, post-weaning, treatment, belgium)2026-03-17v31 / 23pendingNo
2505gpt-5Antibiotics vs control in piglet caecum at Day 39 (treatment effect within site and time) ( high in control compared to treatment tylosin phosphate antimicrobial treatment in sus scrofa domesticus farm sus scrofa municipality of ghent caecum day 39 post-weaning belgium )2026-03-17v31 / 26pendingNo
2505gpt-5Antibiotics vs control in piglet colon at Day 39 (treatment effect within site and time) ( high in control compared to treatment tylosin phosphate antimicrobial treatment in sus scrofa domesticus farm sus scrofa colon municipality of ghent day 39 post-weaning belgium )2026-03-17v31 / 43pendingNo
2505gpt-5Overall antibiotic effect across large intestine sites at Day 39 ( high in treatment tylosin phosphate antimicrobial treatment compared to control in sus scrofa domesticus farm sus scrofa colon municipality of ghent caecum day 39 post-weaning belgium )2026-03-17v31 / 48pendingNo
2505gpt-5Baseline site differences at Day 39: caecum vs colon (controls only) ( high in colon compared to caecum in sus scrofa domesticus farm sus scrofa municipality of ghent day 39 post-weaning control belgium )2026-03-17v31 / 60pendingNo
2505gpt-5Site-specific antibiotic impact at Day 39: caecum vs colon (both treated) ( high in colon compared to caecum in sus scrofa domesticus farm sus scrofa antimicrobial treatment tylosin phosphate municipality of ghent day 39 post-weaning treatment belgium )2026-03-17v31 / 80pendingNo
2505gpt-5Antibiotic-treated piglet caecum samples (Day 39, 16S amplicon) (common sus scrofa domesticus, farm, antimicrobial treatment, sus scrofa, tylosin phosphate, municipality of ghent, caecum, day 39, post-weaning, treatment, belgium)2026-03-17v31 / 118pendingNo
2505gpt-5Overall antibiotic effect across large intestine sites at Day 39 ( high in control compared to treatment tylosin phosphate antimicrobial treatment in sus scrofa domesticus farm sus scrofa colon municipality of ghent caecum day 39 post-weaning belgium )2026-03-17v31 / 120pendingNo
2505gpt-5Control piglet caecum samples (Day 39, 16S amplicon) (common sus scrofa domesticus, farm, sus scrofa, municipality of ghent, caecum, day 39, post-weaning, control, belgium)2026-03-17v31 / 150pendingNo
2505gpt-5Antibiotic-treated piglet fecal samples (Day 0, 16S amplicon) + Control piglet fecal samples (Day 0, 16S amplicon) (common sus scrofa domesticus, farm, sus scrofa, tylosin phosphate, municipality of ghent, feces, post-weaning, day 0, belgium)2026-03-17v31 / 165pendingNo
2505gpt-5Antibiotic-treated piglet colon samples (Day 39, 16S amplicon) (common sus scrofa domesticus, farm, antimicrobial treatment, sus scrofa, colon, tylosin phosphate, municipality of ghent, day 39, post-weaning, treatment, belgium)2026-03-17v31 / 211pendingNo
2505gpt-5Control piglet colon samples (Day 39, 16S amplicon) (common sus scrofa domesticus, farm, sus scrofa, colon, municipality of ghent, day 39, post-weaning, control, belgium)2026-03-17v31 / 231pendingNo

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