Experiment ID: 2493

Field Description
namereal-time monitoring of ruminal microbiota reveals their roles in dairy goats during subacute ruminal acidosis (8121909) - gpt-5
proj_id8121909
sraprjna662847
date_of_upload17/03/2026 16:04
doi10.1038/s41522-021-00215-6
modelgpt-5
sample_groups_version18
dbbact_id787
dbbact_linkhttps://dbbact.org/exp_info/787
needs_manual_reviewtrue

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN mus musculus1.000000
LOWER IN whole grain diet1.000000
antimicrobial treatment1.000000
LOWER IN dairy goat1.000000
LOWER IN negative control1.000000
dairy goat0.500000
LOWER IN ciprofloxacin0.500000
LOWER IN antimicrobial treatment0.500000
shaanxi province0.500000
LOWER IN subacute rumen acidosis0.500000
LOWER IN acidosis0.500000
ciprofloxacin0.500000
whole grain diet0.500000
subacute rumen acidosis0.500000
acidosis0.500000
LOWER IN capra hircus0.500000
negative control0.500000
LOWER IN diet0.333333
LOWER IN starch diet0.250000
LOWER IN ampicillin0.250000
starch diet0.250000
LOWER IN farm0.250000
ampicillin0.200000
LOWER IN male organism0.166667
metronidazole0.166667
capra hircus0.142857
LOWER IN metronidazole0.142857
colitis0.142857
LOWER IN rumen0.142857
LOWER IN colitis0.125000
male organism0.058824
LOWER IN colon0.055556
colon0.043478
diet0.041667
rumen0.037037
farm0.023256
mus musculus0.013699
china0.004717
LOWER IN control0.004545
control0.004444
Fraction of annotations for the query sequences containing the term
TermScore
yangling district1.000000
shaanxi province1.000000
china1.000000
diet0.833333
starch diet0.666667
male organism0.666667
ciprofloxacin0.666667
laboratory facility0.666667
mus musculus0.666667
colon0.666667
treatment0.666667
antimicrobial treatment0.666667
metronidazole0.666667
ampicillin0.666667
rumen microbiota transplantation0.500000
bodily fluid0.416667
dairy goat0.416667
rumen0.416667
capra hircus0.416667
farm0.416667
recipient of healthy goat rumen microbiota0.250000
colitis0.250000
recipient of sara goat rumen microbiota0.250000
subacute ruminal acidosis absent0.208333
healthy0.208333
whole grain diet0.208333
subacute rumen acidosis0.208333
acidosis0.208333
LOWER IN recipient of healthy goat rumen microbiota0.166667
LOWER IN rumen microbiota transplantation0.166667
LOWER IN colitis0.166667
LOWER IN recipient of sara goat rumen microbiota0.166667
control0.166667
no transplantation0.166667
negative control0.166667
LOWER IN whole grain diet0.125000
LOWER IN subacute rumen acidosis0.125000
LOWER IN acidosis0.125000
LOWER IN healthy0.125000
LOWER IN subacute ruminal acidosis absent0.125000
LOWER IN diet0.083333
LOWER IN mus musculus0.083333
LOWER IN colon0.083333
LOWER IN male organism0.083333
LOWER IN ciprofloxacin0.083333
LOWER IN metronidazole0.083333
LOWER IN treatment0.083333
LOWER IN starch diet0.083333
LOWER IN ampicillin0.083333
LOWER IN laboratory facility0.083333
LOWER IN antimicrobial treatment0.083333
LOWER IN bodily fluid0.083333
LOWER IN dairy goat0.083333
LOWER IN rumen0.083333
LOWER IN capra hircus0.083333
LOWER IN farm0.083333
LOWER IN control0.083333
LOWER IN negative control0.083333
LOWER IN no transplantation0.083333
Number of experiments associating the term to the sequence
TermScore
bodily fluid1.000000
subacute ruminal acidosis absent1.000000
dairy goat1.000000
rumen1.000000
capra hircus1.000000
farm1.000000
healthy1.000000
LOWER IN diet1.000000
LOWER IN mus musculus1.000000
LOWER IN colon1.000000
LOWER IN male organism1.000000
LOWER IN ciprofloxacin1.000000
LOWER IN metronidazole1.000000
LOWER IN treatment1.000000
LOWER IN recipient of healthy goat rumen microbiota1.000000
LOWER IN starch diet1.000000
LOWER IN ampicillin1.000000
LOWER IN laboratory facility1.000000
LOWER IN antimicrobial treatment1.000000
LOWER IN rumen microbiota transplantation1.000000
yangling district1.000000
shaanxi province1.000000
china1.000000
LOWER IN whole grain diet1.000000
LOWER IN subacute rumen acidosis1.000000
LOWER IN acidosis1.000000
recipient of healthy goat rumen microbiota1.000000
LOWER IN colitis1.000000
LOWER IN recipient of sara goat rumen microbiota1.000000
starch diet1.000000
male organism1.000000
ciprofloxacin1.000000
laboratory facility1.000000
diet1.000000
mus musculus1.000000
colon1.000000
treatment1.000000
antimicrobial treatment1.000000
metronidazole1.000000
ampicillin1.000000
rumen microbiota transplantation1.000000
whole grain diet1.000000
subacute rumen acidosis1.000000
acidosis1.000000
LOWER IN healthy1.000000
LOWER IN subacute ruminal acidosis absent1.000000
colitis1.000000
recipient of sara goat rumen microbiota1.000000
LOWER IN bodily fluid1.000000
LOWER IN dairy goat1.000000
LOWER IN rumen1.000000
LOWER IN capra hircus1.000000
LOWER IN farm1.000000
control1.000000
no transplantation1.000000
negative control1.000000
LOWER IN control1.000000
LOWER IN negative control1.000000
LOWER IN no transplantation1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2493gpt-5Effect of rumen microbiota transfer: healthy-goat donors vs SARA-goat donors in antibiotic-treated mice (high-starch diet) ( high in recipient of healthy goat rumen microbiota compared to colitis recipient of sara goat rumen microbiota in diet yangling district mus musculus colon male organism ciprofloxacin shaanxi province treatment metronidazole starch diet ampicillin china laboratory facility antimicrobial treatment rumen microbiota transplantation )2026-03-17v31 / 2pendingNo
2493gpt-5Effect of rumen microbiota transfer: healthy-goat donors vs SARA-goat donors in antibiotic-treated mice (high-starch diet) ( high in colitis recipient of sara goat rumen microbiota compared to recipient of healthy goat rumen microbiota in diet yangling district mus musculus colon male organism ciprofloxacin shaanxi province treatment metronidazole starch diet ampicillin china laboratory facility antimicrobial treatment rumen microbiota transplantation )2026-03-17v31 / 2pendingNo
2493gpt-5Healthy dairy goat rumen fluid samples (dominant bodily fluid, subacute ruminal acidosis absent, dairy goat, shaanxi province, rumen, capra hircus, china, yangling district, farm, healthy)2026-03-17v31 / 11pendingNo
2493gpt-5Engraftment/colonization effect: MMT from healthy goats vs no-transplant control in antibiotic-treated mice (high-starch diet) ( high in control negative control no transplantation compared to recipient of healthy goat rumen microbiota rumen microbiota transplantation in diet yangling district mus musculus colon ciprofloxacin shaanxi province treatment metronidazole starch diet ampicillin china laboratory facility antimicrobial treatment male organism )2026-03-17v31 / 11pendingNo
2493gpt-5SARA dairy goat rumen fluid samples (dominant diet, bodily fluid, whole grain diet, dairy goat, subacute rumen acidosis, shaanxi province, rumen, acidosis, china, capra hircus, yangling district, farm)2026-03-17v31 / 15pendingNo
2493gpt-5Colon contents of antibiotic-treated mice receiving rumen microbiota from healthy goats (high-starch diet) (dominant diet, yangling district, mus musculus, colon, ciprofloxacin, shaanxi province, treatment, metronidazole, recipient of healthy goat rumen microbiota, starch diet, ampicillin, china, laboratory facility, antimicrobial treatment, male organism, rumen microbiota transplantation)2026-03-17v31 / 15pendingNo
2493gpt-5Colon contents of antibiotic-treated mice without rumen microbiota transplantation (high-starch diet control) (dominant diet, yangling district, mus musculus, colon, ciprofloxacin, shaanxi province, treatment, metronidazole, control, starch diet, ampicillin, no transplantation, china, laboratory facility, antimicrobial treatment, negative control, male organism)2026-03-17v31 / 17pendingNo
2493gpt-5Colon contents of antibiotic-treated mice receiving rumen microbiota from SARA goats (high-starch diet) (dominant diet, yangling district, mus musculus, colon, ciprofloxacin, shaanxi province, treatment, metronidazole, laboratory facility, starch diet, ampicillin, china, colitis, antimicrobial treatment, male organism, recipient of sara goat rumen microbiota, rumen microbiota transplantation)2026-03-17v31 / 23pendingNo
2493gpt-5Engraftment/colonization effect: MMT from SARA goats vs no-transplant control in antibiotic-treated mice (high-starch diet) ( high in control negative control no transplantation compared to colitis recipient of sara goat rumen microbiota rumen microbiota transplantation in diet yangling district mus musculus colon ciprofloxacin shaanxi province treatment metronidazole starch diet ampicillin china laboratory facility antimicrobial treatment male organism )2026-03-17v31 / 28pendingNo
2493gpt-5Engraftment/colonization effect: MMT from healthy goats vs no-transplant control in antibiotic-treated mice (high-starch diet) ( high in recipient of healthy goat rumen microbiota rumen microbiota transplantation compared to control negative control no transplantation in diet yangling district mus musculus colon ciprofloxacin shaanxi province treatment metronidazole starch diet ampicillin china laboratory facility antimicrobial treatment male organism )2026-03-17v31 / 33pendingNo
2493gpt-5Engraftment/colonization effect: MMT from SARA goats vs no-transplant control in antibiotic-treated mice (high-starch diet) ( high in colitis recipient of sara goat rumen microbiota rumen microbiota transplantation compared to control negative control no transplantation in diet yangling district mus musculus colon ciprofloxacin shaanxi province treatment metronidazole starch diet ampicillin china laboratory facility antimicrobial treatment male organism )2026-03-17v31 / 49pendingNo
2493gpt-5Colon contents of antibiotic-treated mice without rumen microbiota transplantation (high-starch diet control) (common diet, yangling district, mus musculus, colon, ciprofloxacin, shaanxi province, treatment, metronidazole, control, starch diet, ampicillin, no transplantation, china, laboratory facility, antimicrobial treatment, negative control, male organism)2026-03-17v31 / 65pendingNo
2493gpt-5Colon contents of antibiotic-treated mice receiving rumen microbiota from SARA goats (high-starch diet) (common diet, yangling district, mus musculus, colon, ciprofloxacin, shaanxi province, treatment, metronidazole, laboratory facility, starch diet, ampicillin, china, colitis, antimicrobial treatment, male organism, recipient of sara goat rumen microbiota, rumen microbiota transplantation)2026-03-17v31 / 149pendingNo
2493gpt-5Colon contents of antibiotic-treated mice receiving rumen microbiota from healthy goats (high-starch diet) (common diet, yangling district, mus musculus, colon, ciprofloxacin, shaanxi province, treatment, metronidazole, recipient of healthy goat rumen microbiota, starch diet, ampicillin, china, laboratory facility, antimicrobial treatment, male organism, rumen microbiota transplantation)2026-03-17v31 / 155pendingNo
2493gpt-5Cross-species translation: SARA donor rumen vs recipient mouse colon after SARA-donor MMT ( high in mus musculus colon male organism ciprofloxacin metronidazole treatment laboratory facility starch diet ampicillin colitis antimicrobial treatment recipient of sara goat rumen microbiota rumen microbiota transplantation compared to bodily fluid whole grain diet dairy goat subacute rumen acidosis rumen acidosis capra hircus farm in diet yangling district shaanxi province china )2026-03-17v31 / 255pendingNo
2493gpt-5Cross-species translation: healthy donor rumen vs recipient mouse colon after healthy-donor MMT ( high in diet mus musculus colon male organism ciprofloxacin metronidazole treatment recipient of healthy goat rumen microbiota starch diet ampicillin laboratory facility antimicrobial treatment rumen microbiota transplantation compared to bodily fluid subacute ruminal acidosis absent dairy goat rumen capra hircus farm healthy in yangling district shaanxi province china )2026-03-17v31 / 273pendingNo
2493gpt-5SARA dairy goat rumen fluid samples (common diet, bodily fluid, whole grain diet, dairy goat, subacute rumen acidosis, shaanxi province, rumen, acidosis, china, capra hircus, yangling district, farm)2026-03-17v31 / 464pendingNo
2493gpt-5Healthy dairy goat rumen fluid samples (common bodily fluid, subacute ruminal acidosis absent, dairy goat, shaanxi province, rumen, capra hircus, china, yangling district, farm, healthy)2026-03-17v31 / 701pendingNo
2493gpt-5Disease-state signal transfer: SARA donors and their recipient mice vs healthy donors and their recipient mice ( high in whole grain diet subacute rumen acidosis acidosis colitis recipient of sara goat rumen microbiota compared to healthy subacute ruminal acidosis absent recipient of healthy goat rumen microbiota in shaanxi province starch diet capra hircus male organism bodily fluid ciprofloxacin laboratory facility diet mus musculus colon treatment antimicrobial treatment dairy goat metronidazole ampicillin rumen china yangling district farm rumen microbiota transplantation )2026-03-17v31 / 806pendingNo
2493gpt-5Rumen microbiome under health vs SARA in donor goats ( high in diet whole grain diet subacute rumen acidosis acidosis compared to healthy subacute ruminal acidosis absent in bodily fluid dairy goat shaanxi province rumen capra hircus china yangling district farm )2026-03-17v31 / 840pendingNo
2493gpt-5Cross-species translation: SARA donor rumen vs recipient mouse colon after SARA-donor MMT ( high in bodily fluid whole grain diet dairy goat subacute rumen acidosis rumen acidosis capra hircus farm compared to mus musculus colon male organism ciprofloxacin metronidazole treatment laboratory facility starch diet ampicillin colitis antimicrobial treatment recipient of sara goat rumen microbiota rumen microbiota transplantation in diet yangling district shaanxi province china )2026-03-17v31 / 890pendingNo
2493gpt-5Disease-state signal transfer: SARA donors and their recipient mice vs healthy donors and their recipient mice ( high in healthy subacute ruminal acidosis absent recipient of healthy goat rumen microbiota compared to whole grain diet subacute rumen acidosis acidosis colitis recipient of sara goat rumen microbiota in shaanxi province starch diet capra hircus male organism bodily fluid ciprofloxacin laboratory facility diet mus musculus colon treatment antimicrobial treatment dairy goat metronidazole ampicillin rumen china yangling district farm rumen microbiota transplantation )2026-03-17v31 / 1413pendingNo
2493gpt-5Rumen microbiome under health vs SARA in donor goats ( high in healthy subacute ruminal acidosis absent compared to diet whole grain diet subacute rumen acidosis acidosis in bodily fluid dairy goat shaanxi province rumen capra hircus china yangling district farm )2026-03-17v31 / 1447pendingNo
2493gpt-5Cross-species translation: healthy donor rumen vs recipient mouse colon after healthy-donor MMT ( high in bodily fluid subacute ruminal acidosis absent dairy goat rumen capra hircus farm healthy compared to diet mus musculus colon male organism ciprofloxacin metronidazole treatment recipient of healthy goat rumen microbiota starch diet ampicillin laboratory facility antimicrobial treatment rumen microbiota transplantation in yangling district shaanxi province china )2026-03-17v31 / 1484pendingNo

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