Experiment ID: 2492

Field Description
namecage and maternal effects on the bacterial communities of the murine gut (8110963) - gpt-5
proj_id8110963
sraprjeb6905
date_of_upload17/03/2026 16:02
doi10.1038/s41598-021-89185-5
modelgpt-5
sample_groups_version18
dbbact_id909
dbbact_linkhttps://dbbact.org/exp_info/909
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
manchester0.666667
ascending colon0.400000
right colon0.285714
mucus0.222222
LOWER IN ascending colon0.181818
LOWER IN mucus0.181818
LOWER IN right colon0.153846
united kingdom0.117647
male organism0.111111
colon0.080000
LOWER IN colon0.076923
LOWER IN feces0.052632
mus musculus0.027027
feces0.004566
Fraction of dbbact annotations with this term covered by the query
TermScore
manchester0.500000
ascending colon0.333333
LOWER IN ascending colon0.333333
LOWER IN mucus0.333333
right colon0.200000
LOWER IN right colon0.200000
mucus0.142857
united kingdom0.062500
male organism0.058824
LOWER IN colon0.055556
colon0.043478
LOWER IN feces0.033333
mus musculus0.013699
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
mus musculus1.000000
united kingdom1.000000
co-housed1.000000
littermate1.000000
male organism1.000000
manchester1.000000
specific pathogen-free1.000000
animal cage1.000000
right colon0.500000
6-week-old0.500000
colon0.500000
mucus0.500000
ascending colon0.500000
18-week-old0.500000
feces0.500000
LOWER IN feces0.125000
LOWER IN right colon0.125000
LOWER IN colon0.125000
LOWER IN ascending colon0.125000
LOWER IN mucus0.125000
LOWER IN 18-week-old0.125000
LOWER IN 6-week-old0.125000
Number of experiments associating the term to the sequence
TermScore
right colon1.000000
mus musculus1.000000
united kingdom1.000000
co-housed1.000000
6-week-old1.000000
littermate1.000000
colon1.000000
male organism1.000000
mucus1.000000
manchester1.000000
specific pathogen-free1.000000
ascending colon1.000000
animal cage1.000000
18-week-old1.000000
feces1.000000
LOWER IN feces1.000000
LOWER IN right colon1.000000
LOWER IN colon1.000000
LOWER IN ascending colon1.000000
LOWER IN mucus1.000000
LOWER IN 18-week-old1.000000
LOWER IN 6-week-old1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2492gpt-5Body site differences at 18 weeks: mucus-associated vs luminal (stool) communities ( high in feces compared to right colon colon ascending colon mucus in male organism mus musculus united kingdom co-housed 18-week-old littermate manchester specific pathogen-free animal cage )2026-03-17v31 / 1pendingNo
2492gpt-5Body site differences at 18 weeks: mucus-associated vs luminal (stool) communities ( high in right colon colon ascending colon mucus compared to feces in male organism mus musculus united kingdom co-housed 18-week-old littermate manchester specific pathogen-free animal cage )2026-03-17v31 / 21pendingNo
2492gpt-518-week-old mouse stool samples (dominant mus musculus, united kingdom, co-housed, 18-week-old, littermate, male organism, manchester, specific pathogen-free, feces, animal cage)2026-03-17v31 / 25pendingNo
2492gpt-56-week-old mouse mucus samples (dominant right colon, mus musculus, united kingdom, co-housed, 6-week-old, littermate, colon, male organism, mucus, manchester, specific pathogen-free, ascending colon, animal cage)2026-03-17v31 / 25pendingNo
2492gpt-518-week-old mouse mucus samples (dominant right colon, mus musculus, united kingdom, co-housed, 18-week-old, littermate, colon, male organism, mucus, manchester, specific pathogen-free, ascending colon, animal cage)2026-03-17v31 / 25pendingNo
2492gpt-56-week-old mouse stool samples (dominant mus musculus, united kingdom, co-housed, 6-week-old, littermate, male organism, manchester, specific pathogen-free, feces, animal cage)2026-03-17v31 / 26pendingNo
2492gpt-5Age-related differences in gut microbiota in stool (18-week vs 6-week mice) ( high in 18-week-old compared to 6-week-old in male organism mus musculus united kingdom co-housed littermate manchester specific pathogen-free feces animal cage )2026-03-17v31 / 29pendingNo
2492gpt-5Age-related differences in gut-associated mucus microbiota (18-week vs 6-week mice) ( high in 18-week-old compared to 6-week-old in right colon male organism mus musculus united kingdom co-housed littermate colon mucus manchester specific pathogen-free ascending colon animal cage )2026-03-17v31 / 29pendingNo
2492gpt-5Age-related differences in gut-associated mucus microbiota (18-week vs 6-week mice) ( high in 6-week-old compared to 18-week-old in right colon male organism mus musculus united kingdom co-housed littermate colon mucus manchester specific pathogen-free ascending colon animal cage )2026-03-17v31 / 37pendingNo
2492gpt-5Age-related differences in gut microbiota in stool (18-week vs 6-week mice) ( high in 6-week-old compared to 18-week-old in male organism mus musculus united kingdom co-housed littermate manchester specific pathogen-free feces animal cage )2026-03-17v31 / 44pendingNo
2492gpt-5Body site differences at 6 weeks: mucus-associated vs luminal (stool) communities ( high in feces compared to right colon colon ascending colon mucus in male organism mus musculus united kingdom co-housed 6-week-old littermate manchester specific pathogen-free animal cage )2026-03-17v31 / 58pendingNo
2492gpt-5Body site differences at 6 weeks: mucus-associated vs luminal (stool) communities ( high in right colon colon ascending colon mucus compared to feces in male organism mus musculus united kingdom co-housed 6-week-old littermate manchester specific pathogen-free animal cage )2026-03-17v31 / 61pendingNo
2492gpt-518-week-old mouse stool samples (common mus musculus, united kingdom, co-housed, 18-week-old, littermate, male organism, manchester, specific pathogen-free, feces, animal cage)2026-03-17v31 / 160pendingNo
2492gpt-56-week-old mouse stool samples (common mus musculus, united kingdom, co-housed, 6-week-old, littermate, male organism, manchester, specific pathogen-free, feces, animal cage)2026-03-17v31 / 168pendingNo
2492gpt-518-week-old mouse mucus samples (common right colon, mus musculus, united kingdom, co-housed, 18-week-old, littermate, colon, male organism, mucus, manchester, specific pathogen-free, ascending colon, animal cage)2026-03-17v31 / 176pendingNo
2492gpt-56-week-old mouse mucus samples (common right colon, mus musculus, united kingdom, co-housed, 6-week-old, littermate, colon, male organism, mucus, manchester, specific pathogen-free, ascending colon, animal cage)2026-03-17v31 / 195pendingNo

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