Experiment ID: 2477

Field Description
namethree distinct pneumotypes characterize the microbiome of the lung in balb/cj mice (5500332) - gpt-5
proj_id5500332
srasrp082977
date_of_upload17/03/2026 15:46
doi10.1371/journal.pone.0180561
modelgpt-5
sample_groups_version18
dbbact_id230
dbbact_linkhttps://dbbact.org/exp_info/230
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
state of maryland0.400000
upper respiratory tract0.363636
na0.300000
negative control0.300000
LOWER IN upper respiratory tract0.250000
LOWER IN lung0.222222
balb/c0.194690
oropharynx0.190476
LOWER IN oropharynx0.181818
lung0.170213
drinking water0.157895
LOWER IN mus musculus0.133333
LOWER IN na0.133333
LOWER IN negative control0.133333
LOWER IN balb/c0.117647
LOWER IN drinking water0.117647
LOWER IN 0.105263
female organism0.098655
LOWER IN female organism0.086957
mus musculus0.026928
control0.008708
LOWER IN control0.008547
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN mus musculus1.000000
LOWER IN upper respiratory tract1.000000
LOWER IN na1.000000
LOWER IN negative control1.000000
na0.500000
negative control0.500000
LOWER IN lung0.500000
upper respiratory tract0.500000
LOWER IN balb/c0.333333
LOWER IN drinking water0.333333
LOWER IN oropharynx0.250000
state of maryland0.250000
LOWER IN 0.200000
oropharynx0.142857
drinking water0.125000
LOWER IN female organism0.111111
balb/c0.111111
lung0.100000
female organism0.052632
mus musculus0.013699
LOWER IN control0.004545
control0.004444
united states of america0.003333
Exp. ID User ID Description Date Region Sequences Status Flag
2477gpt-5Upper vs lower lung microbiota in mice ( high in upper lobe of right lung compared to lower lobe of right lung in state of maryland specific pathogen free mus musculus lung city of frederick female organism united states of america balb/c laboratory facility )2026-03-17v41 / 1pendingNo
2477gpt-5Upper vs lower lung microbiota in mice ( high in lower lobe of right lung compared to upper lobe of right lung in state of maryland specific pathogen free mus musculus lung city of frederick female organism united states of america balb/c laboratory facility )2026-03-17v41 / 1pendingNo
2477gpt-5Mouse lower lung samples (dominant state of maryland, specific pathogen free, mus musculus, lung, city of frederick, united states of america, balb/c, laboratory facility, lower lobe of right lung, female organism)2026-03-17v41 / 2pendingNo
2477gpt-5Mouse upper respiratory tract (URT) samples (dominant state of maryland, specific pathogen free, mus musculus, oropharynx, city of frederick, united states of america, animal cage, balb/c, laboratory facility, upper respiratory tract, female organism)2026-03-17v41 / 4pendingNo
2477gpt-5Mouse upper lung samples (dominant state of maryland, specific pathogen free, mus musculus, lung, city of frederick, united states of america, balb/c, laboratory facility, female organism, upper lobe of right lung)2026-03-17v41 / 4pendingNo
2477gpt-5Mouse lower lung samples (common state of maryland, specific pathogen free, mus musculus, lung, city of frederick, united states of america, balb/c, laboratory facility, lower lobe of right lung, female organism)2026-03-17v41 / 5pendingNo
2477gpt-5Upper respiratory tract vs lung microbiota in mice ( high in lower lobe of right lung lung upper lobe of right lung compared to animal cage oropharynx upper respiratory tract in state of maryland specific pathogen free mus musculus city of frederick female organism united states of america balb/c laboratory facility )2026-03-17v41 / 5pendingNo
2477gpt-5Reagent and water control samples + Environmental cage samples (bedding and food) (common drinking water, state of maryland, city of frederick, rodent chow, control, autoclaved rodent chow, na, animal cage, united states of america, used bedding, , laboratory facility, animal-associated environment, negative control, autoclaved bedding)2026-03-17v41 / 6pendingNo
2477gpt-5Mouse airway and lung microbiota vs environmental cage background ( high in specific pathogen free mus musculus oropharynx lung female organism balb/c upper respiratory tract lower lobe of right lung upper lobe of right lung compared to drinking water rodent chow control autoclaved rodent chow na used bedding animal-associated environment negative control autoclaved bedding in state of maryland city of frederick united states of america animal cage laboratory facility )2026-03-17v41 / 7pendingNo
2477gpt-5Mouse upper lung samples (common state of maryland, specific pathogen free, mus musculus, lung, city of frederick, united states of america, balb/c, laboratory facility, female organism, upper lobe of right lung)2026-03-17v41 / 8pendingNo
2477gpt-5Mouse upper respiratory tract (URT) samples (common state of maryland, specific pathogen free, mus musculus, oropharynx, city of frederick, united states of america, animal cage, balb/c, laboratory facility, upper respiratory tract, female organism)2026-03-17v41 / 9pendingNo
2477gpt-5Upper respiratory tract vs lung microbiota in mice ( high in animal cage oropharynx upper respiratory tract compared to lower lobe of right lung lung upper lobe of right lung in state of maryland specific pathogen free mus musculus city of frederick female organism united states of america balb/c laboratory facility )2026-03-17v41 / 11pendingNo
2477gpt-5Reagent and water control samples + Environmental cage samples (bedding and food) (dominant drinking water, state of maryland, city of frederick, rodent chow, control, autoclaved rodent chow, na, animal cage, united states of america, used bedding, , laboratory facility, animal-associated environment, negative control, autoclaved bedding)2026-03-17v41 / 13pendingNo
2477gpt-5Mouse airway and lung microbiota vs environmental cage background ( high in drinking water rodent chow control autoclaved rodent chow na used bedding animal-associated environment negative control autoclaved bedding compared to specific pathogen free mus musculus oropharynx lung female organism balb/c upper respiratory tract lower lobe of right lung upper lobe of right lung in state of maryland city of frederick united states of america animal cage laboratory facility )2026-03-17v41 / 55pendingNo

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