Experiment ID: 2477

Field Description
namethree distinct pneumotypes characterize the microbiome of the lung in balb/cj mice (5500332) - gpt-5
proj_id5500332
srasrp082977
date_of_upload17/03/2026 15:46
doi10.1371/journal.pone.0180561
modelgpt-5
sample_groups_version18
dbbact_id230
dbbact_linkhttps://dbbact.org/exp_info/230
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
upper respiratory tract0.307692
na0.260870
negative control0.260870
LOWER IN upper respiratory tract0.250000
state of maryland0.250000
LOWER IN lung0.200000
LOWER IN oropharynx0.142857
LOWER IN mus musculus0.133333
LOWER IN na0.133333
LOWER IN negative control0.133333
oropharynx0.121212
balb/c0.109453
LOWER IN balb/c0.105263
LOWER IN drinking water0.105263
drinking water0.101695
lung0.096386
LOWER IN 0.086957
LOWER IN female organism0.064516
female organism0.052257
mus musculus0.013673
LOWER IN control0.004415
control0.004409
united states of america0.003333
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN mus musculus1.000000
LOWER IN upper respiratory tract1.000000
LOWER IN na1.000000
LOWER IN negative control1.000000
na0.333333
negative control0.333333
LOWER IN lung0.333333
upper respiratory tract0.333333
LOWER IN balb/c0.200000
LOWER IN drinking water0.200000
LOWER IN oropharynx0.142857
state of maryland0.142857
LOWER IN 0.111111
oropharynx0.076923
drinking water0.066667
LOWER IN female organism0.058824
balb/c0.058824
lung0.052632
female organism0.027027
mus musculus0.006897
LOWER IN control0.002278
control0.002227
united states of america0.001669
Exp. ID User ID Description Date Region Sequences Status Flag
2477gpt-5Upper vs lower lung microbiota in mice ( high in upper lobe of right lung compared to lower lobe of right lung in state of maryland specific pathogen free mus musculus lung city of frederick female organism united states of america balb/c laboratory facility )2026-03-17v41 / 1pendingNo
2477gpt-5Upper vs lower lung microbiota in mice ( high in lower lobe of right lung compared to upper lobe of right lung in state of maryland specific pathogen free mus musculus lung city of frederick female organism united states of america balb/c laboratory facility )2026-03-17v41 / 1pendingNo
2477gpt-5Mouse lower lung samples (dominant state of maryland, specific pathogen free, mus musculus, lung, city of frederick, united states of america, balb/c, laboratory facility, lower lobe of right lung, female organism)2026-03-17v41 / 2pendingNo
2477gpt-5Mouse upper respiratory tract (URT) samples (dominant state of maryland, specific pathogen free, mus musculus, oropharynx, city of frederick, united states of america, animal cage, balb/c, laboratory facility, upper respiratory tract, female organism)2026-03-17v41 / 4pendingNo
2477gpt-5Mouse upper lung samples (dominant state of maryland, specific pathogen free, mus musculus, lung, city of frederick, united states of america, balb/c, laboratory facility, female organism, upper lobe of right lung)2026-03-17v41 / 4pendingNo
2477gpt-5Mouse lower lung samples (common state of maryland, specific pathogen free, mus musculus, lung, city of frederick, united states of america, balb/c, laboratory facility, lower lobe of right lung, female organism)2026-03-17v41 / 5pendingNo
2477gpt-5Upper respiratory tract vs lung microbiota in mice ( high in lower lobe of right lung lung upper lobe of right lung compared to animal cage oropharynx upper respiratory tract in state of maryland specific pathogen free mus musculus city of frederick female organism united states of america balb/c laboratory facility )2026-03-17v41 / 5pendingNo
2477gpt-5Reagent and water control samples + Environmental cage samples (bedding and food) (common drinking water, state of maryland, city of frederick, rodent chow, control, autoclaved rodent chow, na, animal cage, united states of america, used bedding, , laboratory facility, animal-associated environment, negative control, autoclaved bedding)2026-03-17v41 / 6pendingNo
2477gpt-5Mouse airway and lung microbiota vs environmental cage background ( high in specific pathogen free mus musculus oropharynx lung female organism balb/c upper respiratory tract lower lobe of right lung upper lobe of right lung compared to drinking water rodent chow control autoclaved rodent chow na used bedding animal-associated environment negative control autoclaved bedding in state of maryland city of frederick united states of america animal cage laboratory facility )2026-03-17v41 / 7pendingNo
2477gpt-5Mouse upper lung samples (common state of maryland, specific pathogen free, mus musculus, lung, city of frederick, united states of america, balb/c, laboratory facility, female organism, upper lobe of right lung)2026-03-17v41 / 8pendingNo
2477gpt-5Mouse upper respiratory tract (URT) samples (common state of maryland, specific pathogen free, mus musculus, oropharynx, city of frederick, united states of america, animal cage, balb/c, laboratory facility, upper respiratory tract, female organism)2026-03-17v41 / 9pendingNo
2477gpt-5Upper respiratory tract vs lung microbiota in mice ( high in animal cage oropharynx upper respiratory tract compared to lower lobe of right lung lung upper lobe of right lung in state of maryland specific pathogen free mus musculus city of frederick female organism united states of america balb/c laboratory facility )2026-03-17v41 / 11pendingNo
2477gpt-5Reagent and water control samples + Environmental cage samples (bedding and food) (dominant drinking water, state of maryland, city of frederick, rodent chow, control, autoclaved rodent chow, na, animal cage, united states of america, used bedding, , laboratory facility, animal-associated environment, negative control, autoclaved bedding)2026-03-17v41 / 13pendingNo
2477gpt-5Mouse airway and lung microbiota vs environmental cage background ( high in drinking water rodent chow control autoclaved rodent chow na used bedding animal-associated environment negative control autoclaved bedding compared to specific pathogen free mus musculus oropharynx lung female organism balb/c upper respiratory tract lower lobe of right lung upper lobe of right lung in state of maryland city of frederick united states of america animal cage laboratory facility )2026-03-17v41 / 55pendingNo

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