Experiment ID: 2448

Field Description
name16s rrna amplicon sequencing of urban prokaryotic communities in the south bronx river estuary (7256250) - gpt-5
proj_id7256250
sraprjna606795
date_of_upload17/03/2026 15:16
doi10.1128/mra.00182-20
modelgpt-5
sample_groups_version18
dbbact_id722
dbbact_linkhttps://dbbact.org/exp_info/722
needs_manual_reviewtrue

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN river1.000000
hunts point0.500000
soundview0.500000
oyster reef0.500000
LOWER IN oyster reef0.500000
LOWER IN soundview0.500000
LOWER IN hunts point0.500000
depth (water) 0cm0.333333
LOWER IN depth (sediment) 0-20cm0.333333
LOWER IN sediment surface0.333333
sediment surface0.250000
LOWER IN depth (water) 0cm0.250000
estuary0.250000
LOWER IN surface water0.200000
depth (sediment) 0-20cm0.166667
new york city0.142857
LOWER IN sediment0.142857
river0.076923
surface water0.058824
sediment0.033333
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
estuary1.000000
low tide1.000000
new york city1.000000
borough of the bronx1.000000
united states of america1.000000
restoration site0.555556
hunts point0.555556
soundview0.555556
oyster reef0.555556
sediment0.500000
depth (sediment) 0-20cm0.500000
sediment surface0.500000
river0.500000
depth (water) 0cm0.500000
surface water0.500000
former illegal dump area0.277778
LOWER IN depth (water) 0cm0.166667
LOWER IN surface water0.166667
LOWER IN river0.166667
LOWER IN former illegal dump area0.166667
LOWER IN sediment0.166667
LOWER IN depth (sediment) 0-20cm0.166667
LOWER IN sediment surface0.166667
LOWER IN oyster reef0.111111
LOWER IN soundview0.111111
LOWER IN restoration site0.111111
LOWER IN hunts point0.111111
Exp. ID User ID Description Date Region Sequences Status Flag
2448gpt-5Hunts Point Riverside Park sediment samples (16S amplicon) (dominant sediment surface, estuary, restoration site, depth (sediment) 0-20cm, low tide, hunts point, new york city, former illegal dump area, sediment, borough of the bronx, united states of america)2026-03-17v41 / 8pendingNo
2448gpt-5Soundview Park sediment samples (16S amplicon) (dominant sediment surface, estuary, depth (sediment) 0-20cm, low tide, soundview, new york city, oyster reef, sediment, borough of the bronx, united states of america)2026-03-17v41 / 8pendingNo
2448gpt-5Soundview Park water samples (16S amplicon) (dominant estuary, river, low tide, depth (water) 0cm, soundview, new york city, oyster reef, borough of the bronx, surface water, united states of america)2026-03-17v41 / 16pendingNo
2448gpt-5Hunts Point Riverside Park water samples (16S amplicon) (dominant estuary, restoration site, river, low tide, hunts point, depth (water) 0cm, new york city, borough of the bronx, surface water, united states of america)2026-03-17v41 / 22pendingNo
2448gpt-5Site effect on water microbiomes: Hunts Point vs Soundview (16S amplicon) ( high in restoration site hunts point compared to oyster reef soundview in estuary river low tide depth (water) 0cm new york city borough of the bronx surface water united states of america )2026-03-17v41 / 31pendingNo
2448gpt-5Site effect on water microbiomes: Hunts Point vs Soundview (16S amplicon) ( high in oyster reef soundview compared to restoration site hunts point in estuary river low tide depth (water) 0cm new york city borough of the bronx surface water united states of america )2026-03-17v41 / 150pendingNo
2448gpt-5Sediment vs water microbial communities at Soundview Park (16S amplicon) ( high in depth (water) 0cm surface water river compared to sediment surface sediment depth (sediment) 0-20cm in estuary low tide soundview new york city oyster reef borough of the bronx united states of america )2026-03-17v41 / 222pendingNo
2448gpt-5Sediment vs water microbial communities at Hunts Point Riverside Park (16S amplicon) ( high in depth (water) 0cm surface water river compared to former illegal dump area sediment depth (sediment) 0-20cm sediment surface in restoration site estuary low tide hunts point new york city borough of the bronx united states of america )2026-03-17v41 / 281pendingNo
2448gpt-5Hunts Point Riverside Park water samples (16S amplicon) (common estuary, restoration site, river, low tide, hunts point, depth (water) 0cm, new york city, borough of the bronx, surface water, united states of america)2026-03-17v41 / 301pendingNo
2448gpt-5Overall habitat effect across sites: all sediments vs all waters (16S amplicon) ( high in depth (water) 0cm surface water river compared to former illegal dump area sediment depth (sediment) 0-20cm sediment surface in restoration site estuary low tide hunts point soundview new york city oyster reef borough of the bronx united states of america )2026-03-17v41 / 401pendingNo
2448gpt-5Soundview Park water samples (16S amplicon) (common estuary, river, low tide, depth (water) 0cm, soundview, new york city, oyster reef, borough of the bronx, surface water, united states of america)2026-03-17v41 / 478pendingNo
2448gpt-5Site effect on sediment microbiomes: Hunts Point vs Soundview (16S amplicon) ( high in oyster reef soundview compared to former illegal dump area restoration site hunts point in sediment surface estuary depth (sediment) 0-20cm low tide new york city sediment borough of the bronx united states of america )2026-03-17v41 / 510pendingNo
2448gpt-5Site effect on sediment microbiomes: Hunts Point vs Soundview (16S amplicon) ( high in former illegal dump area restoration site hunts point compared to oyster reef soundview in sediment surface estuary depth (sediment) 0-20cm low tide new york city sediment borough of the bronx united states of america )2026-03-17v41 / 728pendingNo
2448gpt-5Soundview Park sediment samples (16S amplicon) (common sediment surface, estuary, depth (sediment) 0-20cm, low tide, soundview, new york city, oyster reef, sediment, borough of the bronx, united states of america)2026-03-17v41 / 933pendingNo
2448gpt-5Hunts Point Riverside Park sediment samples (16S amplicon) (common sediment surface, estuary, restoration site, depth (sediment) 0-20cm, low tide, hunts point, new york city, former illegal dump area, sediment, borough of the bronx, united states of america)2026-03-17v41 / 1008pendingNo
2448gpt-5Sediment vs water microbial communities at Soundview Park (16S amplicon) ( high in sediment surface sediment depth (sediment) 0-20cm compared to depth (water) 0cm surface water river in estuary low tide soundview new york city oyster reef borough of the bronx united states of america )2026-03-17v41 / 1114pendingNo
2448gpt-5Sediment vs water microbial communities at Hunts Point Riverside Park (16S amplicon) ( high in former illegal dump area sediment depth (sediment) 0-20cm sediment surface compared to depth (water) 0cm surface water river in restoration site estuary low tide hunts point new york city borough of the bronx united states of america )2026-03-17v41 / 1463pendingNo
2448gpt-5Overall habitat effect across sites: all sediments vs all waters (16S amplicon) ( high in former illegal dump area sediment depth (sediment) 0-20cm sediment surface compared to depth (water) 0cm surface water river in restoration site estuary low tide hunts point soundview new york city oyster reef borough of the bronx united states of america )2026-03-17v41 / 1740pendingNo

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