Experiment ID: 2442

Field Description
nameeffects of sex and chronic cigarette smoke exposure on the mouse cecal microbiome (7135149) - gpt-5
proj_id7135149
sraprjna589852
date_of_upload17/03/2026 15:13
doi10.1371/journal.pone.0230932
modelgpt-5
sample_groups_version18
dbbact_id611
dbbact_linkhttps://dbbact.org/exp_info/611
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
luminal content0.666667
nose0.520000
vancouver0.400000
ovariectomy0.285714
cigarette smoking0.285714
cecal content0.250000
LOWER IN nose0.222222
c57bl/6j0.153846
LOWER IN male organism0.142857
LOWER IN female organism0.117647
male organism0.101695
female organism0.097087
canada0.055556
caecum0.039216
mus musculus0.027027
control0.008817
LOWER IN control0.008772
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN nose1.000000
luminal content0.500000
nose0.500000
ovariectomy0.333333
vancouver0.250000
cigarette smoking0.166667
LOWER IN male organism0.166667
cecal content0.142857
LOWER IN female organism0.111111
c57bl/6j0.083333
male organism0.058824
female organism0.052632
canada0.028571
caecum0.020000
mus musculus0.013699
LOWER IN control0.004545
control0.004444
Fraction of annotations for the query sequences containing the term
TermScore
cigarette smoking1.000000
caecum1.000000
canada1.000000
luminal content1.000000
12-week-old1.000000
c57bl/6j1.000000
cecal content1.000000
mus musculus1.000000
vancouver1.000000
laboratory facility1.000000
female organism0.625000
air exposure0.541667
control0.541667
smoke0.541667
nose0.541667
nicotine0.541667
chronic exposure (6 months)0.541667
male organism0.375000
surgically ovariectomized0.250000
ovariectomy0.250000
LOWER IN chronic exposure (6 months)0.125000
LOWER IN nicotine0.125000
LOWER IN nose0.125000
LOWER IN smoke0.125000
LOWER IN male organism0.125000
LOWER IN air exposure0.125000
LOWER IN control0.125000
LOWER IN female organism0.125000
Number of experiments associating the term to the sequence
TermScore
cigarette smoking1.000000
caecum1.000000
canada1.000000
male organism1.000000
luminal content1.000000
12-week-old1.000000
air exposure1.000000
c57bl/6j1.000000
cecal content1.000000
mus musculus1.000000
vancouver1.000000
laboratory facility1.000000
control1.000000
female organism1.000000
smoke1.000000
nose1.000000
nicotine1.000000
chronic exposure (6 months)1.000000
surgically ovariectomized1.000000
ovariectomy1.000000
LOWER IN chronic exposure (6 months)1.000000
LOWER IN nicotine1.000000
LOWER IN nose1.000000
LOWER IN smoke1.000000
LOWER IN male organism1.000000
LOWER IN air exposure1.000000
LOWER IN control1.000000
LOWER IN female organism1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2442gpt-5Effect of cigarette smoke exposure in female mice (cecal microbiome) ( high in chronic exposure (6 months) nicotine nose smoke compared to air exposure control in cigarette smoking caecum canada luminal content 12-week-old c57bl/6j cecal content female organism mus musculus vancouver laboratory facility )2026-03-17v41 / 3pendingNo
2442gpt-5Effect of cigarette smoke exposure in female mice (cecal microbiome) ( high in air exposure control compared to chronic exposure (6 months) nicotine nose smoke in cigarette smoking caecum canada luminal content 12-week-old c57bl/6j cecal content female organism mus musculus vancouver laboratory facility )2026-03-17v41 / 4pendingNo
2442gpt-5Sex differences under air exposure (male vs female controls) ( high in male organism compared to female organism in cigarette smoking caecum canada luminal content 12-week-old air exposure c57bl/6j cecal content mus musculus vancouver laboratory facility control )2026-03-17v41 / 6pendingNo
2442gpt-5Sex differences under smoke exposure (male vs female) ( high in male organism compared to female organism in cigarette smoking caecum canada smoke luminal content 12-week-old nose nicotine chronic exposure (6 months) c57bl/6j cecal content mus musculus vancouver laboratory facility )2026-03-17v41 / 9pendingNo
2442gpt-5Sex differences under air exposure (male vs female controls) ( high in female organism compared to male organism in cigarette smoking caecum canada luminal content 12-week-old air exposure c57bl/6j cecal content mus musculus vancouver laboratory facility control )2026-03-17v41 / 13pendingNo
2442gpt-5Control ovariectomized female mouse cecal samples (air-exposed) (dominant cigarette smoking, caecum, canada, surgically ovariectomized, female organism, luminal content, ovariectomy, air exposure, 12-week-old, c57bl/6j, cecal content, mus musculus, vancouver, laboratory facility, control)2026-03-17v41 / 14pendingNo
2442gpt-5Smoke-exposed ovariectomized female mouse cecal samples (dominant cigarette smoking, caecum, canada, surgically ovariectomized, smoke, female organism, luminal content, ovariectomy, nose, nicotine, 12-week-old, chronic exposure (6 months), cecal content, c57bl/6j, mus musculus, vancouver, laboratory facility)2026-03-17v41 / 14pendingNo
2442gpt-5Control male mouse cecal samples (air-exposed) (dominant cigarette smoking, caecum, canada, male organism, luminal content, 12-week-old, air exposure, c57bl/6j, cecal content, mus musculus, vancouver, laboratory facility, control)2026-03-17v41 / 15pendingNo
2442gpt-5Smoke-exposed female mouse cecal samples (dominant cigarette smoking, caecum, canada, smoke, female organism, luminal content, 12-week-old, nose, nicotine, chronic exposure (6 months), c57bl/6j, cecal content, mus musculus, vancouver, laboratory facility)2026-03-17v41 / 16pendingNo
2442gpt-5Smoke-exposed male mouse cecal samples (dominant cigarette smoking, caecum, canada, male organism, smoke, luminal content, 12-week-old, nose, nicotine, chronic exposure (6 months), c57bl/6j, cecal content, mus musculus, vancouver, laboratory facility)2026-03-17v41 / 16pendingNo
2442gpt-5Control female mouse cecal samples (air-exposed) (dominant cigarette smoking, caecum, canada, female organism, luminal content, 12-week-old, air exposure, c57bl/6j, cecal content, mus musculus, vancouver, laboratory facility, control)2026-03-17v41 / 16pendingNo
2442gpt-5Sex differences under smoke exposure (male vs female) ( high in female organism compared to male organism in cigarette smoking caecum canada smoke luminal content 12-week-old nose nicotine chronic exposure (6 months) c57bl/6j cecal content mus musculus vancouver laboratory facility )2026-03-17v41 / 18pendingNo
2442gpt-5Effect of cigarette smoke exposure in ovariectomized females (cecal microbiome) ( high in air exposure control compared to chronic exposure (6 months) nicotine nose smoke in cigarette smoking caecum canada surgically ovariectomized luminal content ovariectomy 12-week-old c57bl/6j cecal content female organism mus musculus vancouver laboratory facility )2026-03-17v41 / 20pendingNo
2442gpt-5Interaction check: smoke effect magnitude differs by sex (smoke vs air, males vs females) ( high in male organism compared to female organism in cigarette smoking caecum canada smoke luminal content 12-week-old air exposure nose nicotine chronic exposure (6 months) cecal content c57bl/6j mus musculus vancouver laboratory facility control )2026-03-17v41 / 21pendingNo
2442gpt-5Effect of cigarette smoke exposure in ovariectomized females (cecal microbiome) ( high in chronic exposure (6 months) nicotine nose smoke compared to air exposure control in cigarette smoking caecum canada surgically ovariectomized luminal content ovariectomy 12-week-old c57bl/6j cecal content female organism mus musculus vancouver laboratory facility )2026-03-17v41 / 22pendingNo
2442gpt-5Effect of cigarette smoke exposure in male mice (cecal microbiome) ( high in chronic exposure (6 months) nicotine nose smoke compared to air exposure control in cigarette smoking caecum canada male organism luminal content 12-week-old c57bl/6j cecal content mus musculus vancouver laboratory facility )2026-03-17v41 / 36pendingNo
2442gpt-5Interaction check: smoke effect magnitude differs by sex (smoke vs air, males vs females) ( high in female organism compared to male organism in cigarette smoking caecum canada smoke luminal content 12-week-old air exposure nose nicotine chronic exposure (6 months) cecal content c57bl/6j mus musculus vancouver laboratory facility control )2026-03-17v41 / 37pendingNo
2442gpt-5Effect of cigarette smoke exposure in male mice (cecal microbiome) ( high in air exposure control compared to chronic exposure (6 months) nicotine nose smoke in cigarette smoking caecum canada male organism luminal content 12-week-old c57bl/6j cecal content mus musculus vancouver laboratory facility )2026-03-17v41 / 53pendingNo
2442gpt-5Control ovariectomized female mouse cecal samples (air-exposed) (common cigarette smoking, caecum, canada, surgically ovariectomized, female organism, luminal content, ovariectomy, air exposure, 12-week-old, c57bl/6j, cecal content, mus musculus, vancouver, laboratory facility, control)2026-03-17v41 / 166pendingNo
2442gpt-5Smoke-exposed female mouse cecal samples (common cigarette smoking, caecum, canada, smoke, female organism, luminal content, 12-week-old, nose, nicotine, chronic exposure (6 months), c57bl/6j, cecal content, mus musculus, vancouver, laboratory facility)2026-03-17v41 / 190pendingNo
2442gpt-5Smoke-exposed ovariectomized female mouse cecal samples (common cigarette smoking, caecum, canada, surgically ovariectomized, smoke, female organism, luminal content, ovariectomy, nose, nicotine, 12-week-old, chronic exposure (6 months), cecal content, c57bl/6j, mus musculus, vancouver, laboratory facility)2026-03-17v41 / 195pendingNo
2442gpt-5Smoke-exposed male mouse cecal samples (common cigarette smoking, caecum, canada, male organism, smoke, luminal content, 12-week-old, nose, nicotine, chronic exposure (6 months), c57bl/6j, cecal content, mus musculus, vancouver, laboratory facility)2026-03-17v41 / 201pendingNo
2442gpt-5Control female mouse cecal samples (air-exposed) (common cigarette smoking, caecum, canada, female organism, luminal content, 12-week-old, air exposure, c57bl/6j, cecal content, mus musculus, vancouver, laboratory facility, control)2026-03-17v41 / 213pendingNo
2442gpt-5Control male mouse cecal samples (air-exposed) (common cigarette smoking, caecum, canada, male organism, luminal content, 12-week-old, air exposure, c57bl/6j, cecal content, mus musculus, vancouver, laboratory facility, control)2026-03-17v41 / 215pendingNo

Problems / suggestions? Please visit the dbBact forum