Experiment ID: 2422

Field Description
namemicrobiome profiles of ligature-induced periodontitis in nonhuman primates across the life span (6529664) - gpt-5
proj_id6529664
sraprjna516659
date_of_upload17/03/2026 14:45
doi10.1128/iai.00067-19
modelgpt-5
sample_groups_version18
dbbact_id542
dbbact_linkhttps://dbbact.org/exp_info/542
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
natural tooth0.666667
tooth0.666667
puerto rico0.333333
human aged stage0.256410
macaca mulatta0.222222
LOWER IN human aged stage0.214286
LOWER IN adolescent stage0.193548
subgingival dental plaque0.181818
LOWER IN adult organism0.162162
young age0.156250
LOWER IN young age0.121212
periodontitis0.117647
adolescent stage0.112676
adult organism0.080645
captive0.060606
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
natural tooth0.500000
tooth0.500000
LOWER IN human aged stage0.333333
human aged stage0.250000
LOWER IN adolescent stage0.250000
puerto rico0.200000
LOWER IN adult organism0.166667
LOWER IN young age0.142857
macaca mulatta0.125000
young age0.111111
subgingival dental plaque0.100000
adolescent stage0.076923
periodontitis0.062500
adult organism0.047619
captive0.031250
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
puerto rico1.000000
natural tooth1.000000
ligature-induced periodontitis1.000000
united states of america1.000000
barrio of sabana seca1.000000
macaca mulatta1.000000
subgingival dental plaque1.000000
periodontitis1.000000
tooth1.000000
captive1.000000
human aged stage0.263158
adult organism0.263158
young age0.263158
adolescent stage0.210526
LOWER IN adolescent stage0.157895
LOWER IN human aged stage0.157895
LOWER IN adult organism0.157895
LOWER IN young age0.105263
Number of experiments associating the term to the sequence
TermScore
human aged stage1.000000
LOWER IN adolescent stage1.000000
puerto rico1.000000
natural tooth1.000000
ligature-induced periodontitis1.000000
united states of america1.000000
barrio of sabana seca1.000000
macaca mulatta1.000000
subgingival dental plaque1.000000
periodontitis1.000000
tooth1.000000
captive1.000000
LOWER IN young age1.000000
adult organism1.000000
young age1.000000
LOWER IN human aged stage1.000000
adolescent stage1.000000
LOWER IN adult organism1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2422gpt-5Age-related shifts in macaque subgingival plaque: young vs adolescent ( high in young age compared to adolescent stage in puerto rico natural tooth ligature-induced periodontitis united states of america barrio of sabana seca macaca mulatta subgingival dental plaque periodontitis tooth captive )2026-03-17v41 / 2pendingNo
2422gpt-5Impact of aging on subgingival microbiome: adult vs aged macaques ( high in human aged stage compared to adult organism in puerto rico natural tooth ligature-induced periodontitis united states of america barrio of sabana seca macaca mulatta subgingival dental plaque periodontitis tooth captive )2026-03-17v41 / 6pendingNo
2422gpt-5Impact of aging on subgingival microbiome: adult vs aged macaques ( high in adult organism compared to human aged stage in puerto rico natural tooth ligature-induced periodontitis united states of america barrio of sabana seca macaca mulatta subgingival dental plaque periodontitis tooth captive )2026-03-17v41 / 9pendingNo
2422gpt-5Adolescent macaque subgingival plaque samples (dominant puerto rico, natural tooth, ligature-induced periodontitis, united states of america, barrio of sabana seca, macaca mulatta, subgingival dental plaque, adolescent stage, periodontitis, tooth, captive)2026-03-17v41 / 16pendingNo
2422gpt-5Aged macaque subgingival plaque samples (dominant puerto rico, natural tooth, ligature-induced periodontitis, united states of america, barrio of sabana seca, macaca mulatta, subgingival dental plaque, human aged stage, periodontitis, tooth, captive)2026-03-17v41 / 19pendingNo
2422gpt-5Adult macaque subgingival plaque samples (dominant puerto rico, natural tooth, ligature-induced periodontitis, united states of america, barrio of sabana seca, macaca mulatta, subgingival dental plaque, periodontitis, tooth, captive, adult organism)2026-03-17v41 / 23pendingNo
2422gpt-5Young macaque subgingival plaque samples (dominant puerto rico, natural tooth, ligature-induced periodontitis, united states of america, young age, barrio of sabana seca, macaca mulatta, subgingival dental plaque, periodontitis, tooth, captive)2026-03-17v41 / 25pendingNo
2422gpt-5Maturation of subgingival microbiome: adolescent vs adult macaques ( high in adolescent stage compared to adult organism in puerto rico natural tooth ligature-induced periodontitis united states of america barrio of sabana seca macaca mulatta subgingival dental plaque periodontitis tooth captive )2026-03-17v41 / 28pendingNo
2422gpt-5Adolescent macaque subgingival plaque samples (common puerto rico, natural tooth, ligature-induced periodontitis, united states of america, barrio of sabana seca, macaca mulatta, subgingival dental plaque, adolescent stage, periodontitis, tooth, captive)2026-03-17v41 / 41pendingNo
2422gpt-5Pre- vs post-pubertal subgingival communities: young vs adult macaques ( high in young age compared to adult organism in puerto rico natural tooth ligature-induced periodontitis united states of america barrio of sabana seca macaca mulatta subgingival dental plaque periodontitis tooth captive )2026-03-17v41 / 44pendingNo
2422gpt-5Mid-life gradient in oral plaque: adolescent vs aged macaques ( high in adolescent stage compared to human aged stage in puerto rico natural tooth ligature-induced periodontitis united states of america barrio of sabana seca macaca mulatta subgingival dental plaque periodontitis tooth captive )2026-03-17v41 / 47pendingNo
2422gpt-5Early-life vs senescent oral microbiome: young vs aged macaques ( high in young age compared to human aged stage in puerto rico natural tooth ligature-induced periodontitis united states of america barrio of sabana seca macaca mulatta subgingival dental plaque periodontitis tooth captive )2026-03-17v41 / 53pendingNo
2422gpt-5Young macaque subgingival plaque samples (common puerto rico, natural tooth, ligature-induced periodontitis, united states of america, young age, barrio of sabana seca, macaca mulatta, subgingival dental plaque, periodontitis, tooth, captive)2026-03-17v41 / 86pendingNo
2422gpt-5Aged macaque subgingival plaque samples (common puerto rico, natural tooth, ligature-induced periodontitis, united states of america, barrio of sabana seca, macaca mulatta, subgingival dental plaque, human aged stage, periodontitis, tooth, captive)2026-03-17v41 / 223pendingNo
2422gpt-5Adult macaque subgingival plaque samples (common puerto rico, natural tooth, ligature-induced periodontitis, united states of america, barrio of sabana seca, macaca mulatta, subgingival dental plaque, periodontitis, tooth, captive, adult organism)2026-03-17v41 / 235pendingNo
2422gpt-5Pre- vs post-pubertal subgingival communities: young vs adult macaques ( high in adult organism compared to young age in puerto rico natural tooth ligature-induced periodontitis united states of america barrio of sabana seca macaca mulatta subgingival dental plaque periodontitis tooth captive )2026-03-17v41 / 299pendingNo
2422gpt-5Maturation of subgingival microbiome: adolescent vs adult macaques ( high in adult organism compared to adolescent stage in puerto rico natural tooth ligature-induced periodontitis united states of america barrio of sabana seca macaca mulatta subgingival dental plaque periodontitis tooth captive )2026-03-17v41 / 309pendingNo
2422gpt-5Early-life vs senescent oral microbiome: young vs aged macaques ( high in human aged stage compared to young age in puerto rico natural tooth ligature-induced periodontitis united states of america barrio of sabana seca macaca mulatta subgingival dental plaque periodontitis tooth captive )2026-03-17v41 / 323pendingNo
2422gpt-5Mid-life gradient in oral plaque: adolescent vs aged macaques ( high in human aged stage compared to adolescent stage in puerto rico natural tooth ligature-induced periodontitis united states of america barrio of sabana seca macaca mulatta subgingival dental plaque periodontitis tooth captive )2026-03-17v41 / 339pendingNo

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