Experiment ID: 2421

Field Description
namecage and maternal effects on the bacterial communities of the murine gut (8110963) - gpt-5
proj_id8110963
sraprjeb6905
date_of_upload17/03/2026 11:05
doi10.1038/s41598-021-89185-5
modelgpt-5
sample_groups_version18
dbbact_id909
dbbact_linkhttps://dbbact.org/exp_info/909
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
manchester0.666667
ascending colon0.400000
right colon0.285714
mucus0.222222
LOWER IN ascending colon0.181818
LOWER IN mucus0.181818
LOWER IN right colon0.153846
united kingdom0.117647
male organism0.111111
colon0.080000
LOWER IN colon0.076923
LOWER IN feces0.052632
mus musculus0.027027
feces0.004566
Fraction of dbbact annotations with this term covered by the query
TermScore
manchester0.500000
ascending colon0.333333
LOWER IN ascending colon0.333333
LOWER IN mucus0.333333
right colon0.200000
LOWER IN right colon0.200000
mucus0.142857
united kingdom0.062500
male organism0.058824
LOWER IN colon0.055556
colon0.043478
LOWER IN feces0.033333
mus musculus0.013699
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
animal cage1.000000
mus musculus1.000000
littermate1.000000
co-housed1.000000
united kingdom1.000000
manchester1.000000
specific pathogen-free1.000000
male organism1.000000
6-week-old0.500000
right colon0.500000
colon0.500000
mucus0.500000
ascending colon0.500000
18-week-old0.500000
feces0.500000
LOWER IN feces0.125000
LOWER IN ascending colon0.125000
LOWER IN colon0.125000
LOWER IN right colon0.125000
LOWER IN mucus0.125000
LOWER IN 18-week-old0.125000
LOWER IN 6-week-old0.125000
Number of experiments associating the term to the sequence
TermScore
animal cage1.000000
6-week-old1.000000
mus musculus1.000000
right colon1.000000
littermate1.000000
colon1.000000
mucus1.000000
co-housed1.000000
united kingdom1.000000
ascending colon1.000000
manchester1.000000
specific pathogen-free1.000000
male organism1.000000
18-week-old1.000000
feces1.000000
LOWER IN feces1.000000
LOWER IN ascending colon1.000000
LOWER IN colon1.000000
LOWER IN right colon1.000000
LOWER IN mucus1.000000
LOWER IN 18-week-old1.000000
LOWER IN 6-week-old1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2421gpt-5Body site differences at 18 weeks: mucus-associated vs luminal (stool) communities ( high in feces compared to ascending colon colon right colon mucus in animal cage mus musculus littermate co-housed 18-week-old united kingdom manchester specific pathogen-free male organism )2026-03-17v31 / 1pendingNo
2421gpt-5Body site differences at 18 weeks: mucus-associated vs luminal (stool) communities ( high in ascending colon colon right colon mucus compared to feces in animal cage mus musculus littermate co-housed 18-week-old united kingdom manchester specific pathogen-free male organism )2026-03-17v31 / 21pendingNo
2421gpt-518-week-old mouse stool samples (dominant feces, animal cage, mus musculus, littermate, co-housed, 18-week-old, united kingdom, manchester, specific pathogen-free, male organism)2026-03-17v31 / 25pendingNo
2421gpt-56-week-old mouse mucus samples (dominant animal cage, 6-week-old, mus musculus, right colon, littermate, colon, mucus, co-housed, united kingdom, ascending colon, manchester, specific pathogen-free, male organism)2026-03-17v31 / 25pendingNo
2421gpt-518-week-old mouse mucus samples (dominant animal cage, mus musculus, right colon, littermate, colon, mucus, 18-week-old, united kingdom, co-housed, ascending colon, manchester, specific pathogen-free, male organism)2026-03-17v31 / 25pendingNo
2421gpt-56-week-old mouse stool samples (dominant feces, animal cage, 6-week-old, mus musculus, littermate, co-housed, united kingdom, manchester, specific pathogen-free, male organism)2026-03-17v31 / 26pendingNo
2421gpt-5Age-related differences in gut microbiota in stool (18-week vs 6-week mice) ( high in 18-week-old compared to 6-week-old in feces animal cage mus musculus littermate co-housed united kingdom manchester specific pathogen-free male organism )2026-03-17v31 / 29pendingNo
2421gpt-5Age-related differences in gut-associated mucus microbiota (18-week vs 6-week mice) ( high in 18-week-old compared to 6-week-old in animal cage mus musculus right colon littermate colon mucus co-housed united kingdom ascending colon manchester specific pathogen-free male organism )2026-03-17v31 / 29pendingNo
2421gpt-5Age-related differences in gut-associated mucus microbiota (18-week vs 6-week mice) ( high in 6-week-old compared to 18-week-old in animal cage mus musculus right colon littermate colon mucus co-housed united kingdom ascending colon manchester specific pathogen-free male organism )2026-03-17v31 / 37pendingNo
2421gpt-5Age-related differences in gut microbiota in stool (18-week vs 6-week mice) ( high in 6-week-old compared to 18-week-old in feces animal cage mus musculus littermate co-housed united kingdom manchester specific pathogen-free male organism )2026-03-17v31 / 44pendingNo
2421gpt-5Body site differences at 6 weeks: mucus-associated vs luminal (stool) communities ( high in feces compared to ascending colon colon right colon mucus in animal cage 6-week-old mus musculus littermate co-housed united kingdom manchester specific pathogen-free male organism )2026-03-17v31 / 58pendingNo
2421gpt-5Body site differences at 6 weeks: mucus-associated vs luminal (stool) communities ( high in ascending colon colon right colon mucus compared to feces in animal cage 6-week-old mus musculus littermate co-housed united kingdom manchester specific pathogen-free male organism )2026-03-17v31 / 61pendingNo
2421gpt-518-week-old mouse stool samples (common feces, animal cage, mus musculus, littermate, co-housed, 18-week-old, united kingdom, manchester, specific pathogen-free, male organism)2026-03-17v31 / 160pendingNo
2421gpt-56-week-old mouse stool samples (common feces, animal cage, 6-week-old, mus musculus, littermate, co-housed, united kingdom, manchester, specific pathogen-free, male organism)2026-03-17v31 / 168pendingNo
2421gpt-518-week-old mouse mucus samples (common animal cage, mus musculus, right colon, littermate, colon, mucus, 18-week-old, united kingdom, co-housed, ascending colon, manchester, specific pathogen-free, male organism)2026-03-17v31 / 176pendingNo
2421gpt-56-week-old mouse mucus samples (common animal cage, 6-week-old, mus musculus, right colon, littermate, colon, mucus, co-housed, united kingdom, ascending colon, manchester, specific pathogen-free, male organism)2026-03-17v31 / 195pendingNo

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