Experiment ID: 2411

Field Description
name16s rrna amplicon sequencing of urban prokaryotic communities in the south bronx river estuary (7256250) - gpt-5
proj_id7256250
sraprjna606795
date_of_upload17/03/2026 08:45
doi10.1128/mra.00182-20
modelgpt-5
sample_groups_version18
dbbact_id722
dbbact_linkhttps://dbbact.org/exp_info/722
needs_manual_reviewtrue

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN river1.000000
hunts point0.500000
oyster reef0.500000
soundview0.500000
LOWER IN soundview0.500000
LOWER IN oyster reef0.500000
LOWER IN hunts point0.500000
depth (water) 0cm0.333333
LOWER IN sediment surface0.333333
LOWER IN depth (sediment) 0-20cm0.333333
sediment surface0.250000
LOWER IN depth (water) 0cm0.250000
estuary0.250000
LOWER IN surface water0.200000
depth (sediment) 0-20cm0.166667
new york city0.142857
LOWER IN sediment0.142857
river0.076923
surface water0.058824
sediment0.033333
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
estuary1.000000
united states of america1.000000
borough of the bronx1.000000
low tide1.000000
new york city1.000000
hunts point0.555556
restoration site0.555556
oyster reef0.555556
soundview0.555556
sediment surface0.500000
depth (sediment) 0-20cm0.500000
sediment0.500000
depth (water) 0cm0.500000
river0.500000
surface water0.500000
former illegal dump area0.277778
LOWER IN surface water0.166667
LOWER IN depth (water) 0cm0.166667
LOWER IN river0.166667
LOWER IN former illegal dump area0.166667
LOWER IN sediment surface0.166667
LOWER IN depth (sediment) 0-20cm0.166667
LOWER IN sediment0.166667
LOWER IN soundview0.111111
LOWER IN oyster reef0.111111
LOWER IN restoration site0.111111
LOWER IN hunts point0.111111
Exp. ID User ID Description Date Region Sequences Status Flag
2411gpt-5Hunts Point Riverside Park sediment samples (16S amplicon) (dominant sediment surface, estuary, depth (sediment) 0-20cm, united states of america, hunts point, borough of the bronx, low tide, restoration site, sediment, new york city, former illegal dump area)2026-03-17v41 / 8pendingNo
2411gpt-5Soundview Park sediment samples (16S amplicon) (dominant sediment surface, estuary, depth (sediment) 0-20cm, united states of america, borough of the bronx, low tide, oyster reef, sediment, soundview, new york city)2026-03-17v41 / 8pendingNo
2411gpt-5Soundview Park water samples (16S amplicon) (dominant estuary, depth (water) 0cm, united states of america, river, borough of the bronx, low tide, soundview, oyster reef, surface water, new york city)2026-03-17v41 / 16pendingNo
2411gpt-5Hunts Point Riverside Park water samples (16S amplicon) (dominant estuary, depth (water) 0cm, united states of america, river, hunts point, borough of the bronx, low tide, restoration site, surface water, new york city)2026-03-17v41 / 22pendingNo
2411gpt-5Site effect on water microbiomes: Hunts Point vs Soundview (16S amplicon) ( high in restoration site hunts point compared to soundview oyster reef in estuary depth (water) 0cm united states of america river borough of the bronx low tide surface water new york city )2026-03-17v41 / 31pendingNo
2411gpt-5Site effect on water microbiomes: Hunts Point vs Soundview (16S amplicon) ( high in soundview oyster reef compared to restoration site hunts point in estuary depth (water) 0cm united states of america river borough of the bronx low tide surface water new york city )2026-03-17v41 / 150pendingNo
2411gpt-5Sediment vs water microbial communities at Soundview Park (16S amplicon) ( high in surface water depth (water) 0cm river compared to sediment surface depth (sediment) 0-20cm sediment in estuary united states of america borough of the bronx low tide oyster reef soundview new york city )2026-03-17v41 / 222pendingNo
2411gpt-5Sediment vs water microbial communities at Hunts Point Riverside Park (16S amplicon) ( high in surface water depth (water) 0cm river compared to sediment surface depth (sediment) 0-20cm former illegal dump area sediment in estuary united states of america hunts point borough of the bronx low tide restoration site new york city )2026-03-17v41 / 281pendingNo
2411gpt-5Hunts Point Riverside Park water samples (16S amplicon) (common estuary, depth (water) 0cm, united states of america, river, hunts point, borough of the bronx, low tide, restoration site, surface water, new york city)2026-03-17v41 / 301pendingNo
2411gpt-5Overall habitat effect across sites: all sediments vs all waters (16S amplicon) ( high in surface water depth (water) 0cm river compared to sediment surface depth (sediment) 0-20cm former illegal dump area sediment in estuary united states of america hunts point borough of the bronx low tide restoration site oyster reef soundview new york city )2026-03-17v41 / 401pendingNo
2411gpt-5Soundview Park water samples (16S amplicon) (common estuary, depth (water) 0cm, united states of america, river, borough of the bronx, low tide, soundview, oyster reef, surface water, new york city)2026-03-17v41 / 478pendingNo
2411gpt-5Site effect on sediment microbiomes: Hunts Point vs Soundview (16S amplicon) ( high in soundview oyster reef compared to restoration site hunts point former illegal dump area in sediment surface estuary depth (sediment) 0-20cm united states of america borough of the bronx low tide sediment new york city )2026-03-17v41 / 510pendingNo
2411gpt-5Site effect on sediment microbiomes: Hunts Point vs Soundview (16S amplicon) ( high in restoration site hunts point former illegal dump area compared to soundview oyster reef in sediment surface estuary depth (sediment) 0-20cm united states of america borough of the bronx low tide sediment new york city )2026-03-17v41 / 728pendingNo
2411gpt-5Soundview Park sediment samples (16S amplicon) (common sediment surface, estuary, depth (sediment) 0-20cm, united states of america, borough of the bronx, low tide, oyster reef, sediment, soundview, new york city)2026-03-17v41 / 933pendingNo
2411gpt-5Hunts Point Riverside Park sediment samples (16S amplicon) (common sediment surface, estuary, depth (sediment) 0-20cm, united states of america, hunts point, borough of the bronx, low tide, restoration site, sediment, new york city, former illegal dump area)2026-03-17v41 / 1008pendingNo
2411gpt-5Sediment vs water microbial communities at Soundview Park (16S amplicon) ( high in sediment surface depth (sediment) 0-20cm sediment compared to surface water depth (water) 0cm river in estuary united states of america borough of the bronx low tide oyster reef soundview new york city )2026-03-17v41 / 1114pendingNo
2411gpt-5Sediment vs water microbial communities at Hunts Point Riverside Park (16S amplicon) ( high in sediment surface depth (sediment) 0-20cm former illegal dump area sediment compared to surface water depth (water) 0cm river in estuary united states of america hunts point borough of the bronx low tide restoration site new york city )2026-03-17v41 / 1463pendingNo
2411gpt-5Overall habitat effect across sites: all sediments vs all waters (16S amplicon) ( high in sediment surface depth (sediment) 0-20cm former illegal dump area sediment compared to surface water depth (water) 0cm river in estuary united states of america hunts point borough of the bronx low tide restoration site oyster reef soundview new york city )2026-03-17v41 / 1740pendingNo

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