Experiment ID: 2406

Field Description
namemethane seep carbonates host distinct, diverse, and dynamic microbial assemblages (4701829) - gpt-5
proj_id4701829
srasrp055767
date_of_upload17/03/2026 08:20
doi10.1128/mbio.01348-15
modelgpt-5
sample_groups_version18
dbbact_id486
dbbact_linkhttps://dbbact.org/exp_info/486
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
hydrate ridge0.666667
sulfide0.500000
depth (water) 500-1000m0.333333
state of oregon0.250000
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
hydrate ridge0.500000
sulfide0.333333
depth (water) 500-1000m0.200000
state of oregon0.142857
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
state of oregon1.000000
united states of america1.000000
marine environment1.000000
methane1.000000
sea floor1.000000
marine cold seep biome1.000000
depth (water) 500-1000m1.000000
sulfide1.000000
hydrate ridge1.000000
cold seep1.000000
undersea feature1.000000
13-month incubation0.750000
in situ colonization0.750000
sterile substrate deployment0.750000
marine benthic feature0.625000
carbonates0.625000
wood fall0.375000
marine bed0.375000
LOWER IN wood fall0.125000
LOWER IN marine bed0.125000
LOWER IN marine benthic feature0.125000
LOWER IN carbonates0.125000
Number of experiments associating the term to the sequence
TermScore
marine benthic feature1.000000
carbonates1.000000
LOWER IN wood fall1.000000
LOWER IN marine bed1.000000
state of oregon1.000000
13-month incubation1.000000
united states of america1.000000
marine environment1.000000
methane1.000000
sea floor1.000000
marine cold seep biome1.000000
depth (water) 500-1000m1.000000
sulfide1.000000
hydrate ridge1.000000
in situ colonization1.000000
cold seep1.000000
undersea feature1.000000
sterile substrate deployment1.000000
wood fall1.000000
marine bed1.000000
LOWER IN marine benthic feature1.000000
LOWER IN carbonates1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2406gpt-5Native carbonate samples (Low-activity seep sites) (dominant state of oregon, united states of america, carbonates, marine environment, methane, sea floor, undersea feature, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, cold seep, marine benthic feature)2026-03-17v41 / 4pendingNo
2406gpt-5Colonization carbonate samples (Active seep sites) (dominant state of oregon, 13-month incubation, united states of america, carbonates, marine environment, methane, sea floor, undersea feature, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, in situ colonization, cold seep, marine benthic feature, sterile substrate deployment)2026-03-17v41 / 8pendingNo
2406gpt-5Native carbonate samples (Active seep sites) (dominant state of oregon, united states of america, carbonates, marine environment, methane, sea floor, undersea feature, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, cold seep, marine benthic feature)2026-03-17v41 / 9pendingNo
2406gpt-5Colonization carbonate samples (Low-activity seep sites) (dominant state of oregon, 13-month incubation, united states of america, carbonates, marine environment, methane, sea floor, undersea feature, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, in situ colonization, cold seep, marine benthic feature, sterile substrate deployment)2026-03-17v41 / 12pendingNo
2406gpt-5Colonization wood samples (Active seep sites) (dominant state of oregon, 13-month incubation, united states of america, marine environment, marine bed, methane, wood fall, sea floor, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, in situ colonization, cold seep, undersea feature, sterile substrate deployment)2026-03-17v41 / 16pendingNo
2406gpt-5Colonization wood samples (Low-activity seep sites) (dominant state of oregon, 13-month incubation, united states of america, marine environment, marine bed, methane, wood fall, sea floor, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, in situ colonization, cold seep, undersea feature, sterile substrate deployment)2026-03-17v41 / 19pendingNo
2406gpt-5Substrate effect on colonizing communities at active seeps (Wood vs Carbonate) ( high in wood fall marine bed compared to marine benthic feature carbonates in state of oregon 13-month incubation united states of america marine environment methane sea floor marine cold seep biome depth (water) 500-1000m sulfide hydrate ridge in situ colonization cold seep undersea feature sterile substrate deployment )2026-03-17v41 / 48pendingNo
2406gpt-5Colonization wood samples (Active seep sites) (common state of oregon, 13-month incubation, united states of america, marine environment, marine bed, methane, wood fall, sea floor, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, in situ colonization, cold seep, undersea feature, sterile substrate deployment)2026-03-17v41 / 89pendingNo
2406gpt-5Colonization wood samples (Low-activity seep sites) (common state of oregon, 13-month incubation, united states of america, marine environment, marine bed, methane, wood fall, sea floor, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, in situ colonization, cold seep, undersea feature, sterile substrate deployment)2026-03-17v41 / 128pendingNo
2406gpt-5Native carbonate samples (Active seep sites) (common state of oregon, united states of america, carbonates, marine environment, methane, sea floor, undersea feature, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, cold seep, marine benthic feature)2026-03-17v41 / 163pendingNo
2406gpt-5Substrate effect on colonizing communities at low-activity seeps (Wood vs Carbonate) ( high in wood fall marine bed compared to marine benthic feature carbonates in state of oregon 13-month incubation united states of america marine environment methane sea floor marine cold seep biome depth (water) 500-1000m sulfide hydrate ridge in situ colonization cold seep undersea feature sterile substrate deployment )2026-03-17v41 / 185pendingNo
2406gpt-5Colonization carbonate samples (Active seep sites) (common state of oregon, 13-month incubation, united states of america, carbonates, marine environment, methane, sea floor, undersea feature, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, in situ colonization, cold seep, marine benthic feature, sterile substrate deployment)2026-03-17v41 / 316pendingNo
2406gpt-5Substrate effect on colonizing communities at active seeps (Wood vs Carbonate) ( high in marine benthic feature carbonates compared to wood fall marine bed in state of oregon 13-month incubation united states of america marine environment methane sea floor marine cold seep biome depth (water) 500-1000m sulfide hydrate ridge in situ colonization cold seep undersea feature sterile substrate deployment )2026-03-17v41 / 318pendingNo
2406gpt-5Native carbonate samples (Low-activity seep sites) (common state of oregon, united states of america, carbonates, marine environment, methane, sea floor, undersea feature, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, cold seep, marine benthic feature)2026-03-17v41 / 372pendingNo
2406gpt-5Colonization carbonate samples (Low-activity seep sites) (common state of oregon, 13-month incubation, united states of america, carbonates, marine environment, methane, sea floor, undersea feature, marine cold seep biome, depth (water) 500-1000m, sulfide, hydrate ridge, in situ colonization, cold seep, marine benthic feature, sterile substrate deployment)2026-03-17v41 / 522pendingNo
2406gpt-5Substrate effect on colonizing communities at low-activity seeps (Wood vs Carbonate) ( high in marine benthic feature carbonates compared to wood fall marine bed in state of oregon 13-month incubation united states of america marine environment methane sea floor marine cold seep biome depth (water) 500-1000m sulfide hydrate ridge in situ colonization cold seep undersea feature sterile substrate deployment )2026-03-17v41 / 1248pendingNo

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