Experiment ID: 2401

Field Description
namenew york city house mice (mus musculus) as potential reservoirs for pathogenic bacteria and antimicrobial resistance determinants (5904414) - gpt-5
proj_id5904414
srasrp136544
date_of_upload17/03/2026 08:00
doi10.1128/mbio.00624-18
modelgpt-5
sample_groups_version18
dbbact_id337
dbbact_linkhttps://dbbact.org/exp_info/337
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
urban biome0.400000
new york city0.250000
mus musculus0.027027
united states of america0.006645
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
urban biome0.250000
new york city0.142857
mus musculus0.013699
united states of america0.003333
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
room1.000000
feces1.000000
united states of america1.000000
urban biome1.000000
residential building1.000000
new york city1.000000
mus musculus1.000000
manhattan borough0.562500
queens borough0.312500
fresh meadows0.312500
laconia0.312500
upper west side0.312500
bronx borough0.312500
chelsea0.312500
LOWER IN manhattan borough0.187500
LOWER IN chelsea0.187500
LOWER IN laconia0.187500
LOWER IN upper west side0.187500
LOWER IN bronx borough0.187500
LOWER IN queens borough0.187500
LOWER IN fresh meadows0.187500
Number of experiments associating the term to the sequence
TermScore
queens borough1.000000
fresh meadows1.000000
LOWER IN manhattan borough1.000000
LOWER IN chelsea1.000000
room1.000000
feces1.000000
united states of america1.000000
urban biome1.000000
residential building1.000000
new york city1.000000
mus musculus1.000000
LOWER IN laconia1.000000
LOWER IN upper west side1.000000
LOWER IN bronx borough1.000000
laconia1.000000
upper west side1.000000
bronx borough1.000000
manhattan borough1.000000
chelsea1.000000
LOWER IN queens borough1.000000
LOWER IN fresh meadows1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2401gpt-5Upper West Side (M2) vs Laconia (X1) house mouse gut microbiomes ( high in upper west side manhattan borough compared to laconia bronx borough in room feces united states of america urban biome residential building new york city mus musculus )2026-03-17v41 / 5pendingNo
2401gpt-5Upper West Side (M2) vs Laconia (X1) house mouse gut microbiomes ( high in laconia bronx borough compared to upper west side manhattan borough in room feces united states of america urban biome residential building new york city mus musculus )2026-03-17v41 / 9pendingNo
2401gpt-5Fresh Meadows (Q1) house mouse fecal samples (dominant queens borough, room, feces, united states of america, urban biome, fresh meadows, residential building, new york city, mus musculus)2026-03-17v41 / 16pendingNo
2401gpt-5Upper West Side (M2) house mouse fecal samples (dominant room, feces, united states of america, urban biome, upper west side, manhattan borough, residential building, new york city, mus musculus)2026-03-17v41 / 16pendingNo
2401gpt-5Chelsea (M3) house mouse fecal samples (dominant chelsea, room, feces, united states of america, urban biome, manhattan borough, residential building, new york city, mus musculus)2026-03-17v41 / 17pendingNo
2401gpt-5Laconia (X1) house mouse fecal samples (dominant laconia, room, feces, united states of america, urban biome, residential building, bronx borough, new york city, mus musculus)2026-03-17v41 / 22pendingNo
2401gpt-5Queens (Fresh Meadows, Q1) vs non-Queens NYC neighborhoods ( high in laconia upper west side manhattan borough bronx borough chelsea compared to queens borough fresh meadows in room feces united states of america urban biome residential building new york city mus musculus )2026-03-17v41 / 139pendingNo
2401gpt-5High-density Manhattan site (Chelsea, M3) vs other NYC neighborhoods ( high in chelsea compared to queens borough laconia upper west side fresh meadows bronx borough in room feces united states of america urban biome manhattan borough residential building new york city mus musculus )2026-03-17v41 / 145pendingNo
2401gpt-5Chelsea (M3) vs Fresh Meadows (Q1) house mouse gut microbiomes ( high in manhattan borough chelsea compared to queens borough fresh meadows in room feces united states of america urban biome residential building new york city mus musculus )2026-03-17v41 / 166pendingNo
2401gpt-5Chelsea (M3) house mouse fecal samples (common chelsea, room, feces, united states of america, urban biome, manhattan borough, residential building, new york city, mus musculus)2026-03-17v41 / 177pendingNo
2401gpt-5Upper West Side (M2) house mouse fecal samples (common room, feces, united states of america, urban biome, upper west side, manhattan borough, residential building, new york city, mus musculus)2026-03-17v41 / 196pendingNo
2401gpt-5Laconia (X1) house mouse fecal samples (common laconia, room, feces, united states of america, urban biome, residential building, bronx borough, new york city, mus musculus)2026-03-17v41 / 199pendingNo
2401gpt-5Fresh Meadows (Q1) house mouse fecal samples (common queens borough, room, feces, united states of america, urban biome, fresh meadows, residential building, new york city, mus musculus)2026-03-17v41 / 214pendingNo
2401gpt-5High-density Manhattan site (Chelsea, M3) vs other NYC neighborhoods ( high in queens borough laconia upper west side fresh meadows bronx borough compared to chelsea in room feces united states of america urban biome manhattan borough residential building new york city mus musculus )2026-03-17v41 / 332pendingNo
2401gpt-5Queens (Fresh Meadows, Q1) vs non-Queens NYC neighborhoods ( high in queens borough fresh meadows compared to laconia upper west side manhattan borough bronx borough chelsea in room feces united states of america urban biome residential building new york city mus musculus )2026-03-17v41 / 360pendingNo
2401gpt-5Chelsea (M3) vs Fresh Meadows (Q1) house mouse gut microbiomes ( high in queens borough fresh meadows compared to manhattan borough chelsea in room feces united states of america urban biome residential building new york city mus musculus )2026-03-17v41 / 369pendingNo

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