dbBact

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Experiment ID: 240

Field	Description
name	the dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes.
sra	prjna231909
http	https://pubs.broadinstitute.org/diabimmune/data/9
datamd5	0d09d819260286393e1f93f3127d2e7d
mapmd5	17bced15922fe5893c1576703b1a5d07

Annotations for experiment:

term enrichment score

Term	Score
age < 3 years	0.285714
finland	0.090909
LOWER IN under-1-year-old human stage	0.086957
LOWER IN 1-year-old human stage	0.074074
under-1-year-old human stage	0.074074
1-year-old human stage	0.060606
age	0.046512
infant	0.027027
homo sapiens	0.002591
feces	0.002294

Fraction of dbbact annotations with this term covered by the query

Term	Score
age < 3 years	0.200000
LOWER IN under-1-year-old human stage	0.052632
finland	0.047619
LOWER IN 1-year-old human stage	0.043478
under-1-year-old human stage	0.043478
1-year-old human stage	0.034483
age	0.024390
infant	0.013699
homo sapiens	0.001297
feces	0.001148

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
feces	1.000000
infant	1.000000
finland	1.000000
age	0.500000
age < 3 years	0.500000
LOWER IN under-1-year-old human stage	0.250000
1-year-old human stage	0.250000
LOWER IN 1-year-old human stage	0.250000
under-1-year-old human stage	0.250000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
feces	1.000000
infant	1.000000
finland	1.000000
age	1.000000
LOWER IN under-1-year-old human stage	1.000000
1-year-old human stage	1.000000
age < 3 years	1.000000
LOWER IN 1-year-old human stage	1.000000
under-1-year-old human stage	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
240	amnon	high freq. in infants age <3 years (dominant homo sapiens, feces, finland, infant, age < 3 years)	2017-11-12	v4	1 / 21	approved	No
240	amnon	higher in infants age<1 year compared to 1-3 years in baby feces ( high in age under-1-year-old human stage compared to 1-year-old human stage in homo sapiens feces infant finland )	2017-11-12	v4	1 / 35	approved	No
240	amnon	common in infants age <3 years (common homo sapiens, feces, finland, infant, age < 3 years)	2017-11-12	v4	1 / 36	approved	No
240	amnon	lower in infants age<1 year compared to 1-3 years in baby feces ( high in age 1-year-old human stage compared to under-1-year-old human stage in homo sapiens feces infant finland )	2017-11-12	v4	1 / 567	approved	No

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