dbBact

This is the development server

Experiment ID: 236

Field	Description
name	microbial communities in sediment from zostera marina patches, but not the z. marina leaf or root microbiomes, vary in relation to distance from patch edge
sra	srp092613
sra	prjna350006
datamd5	72a0eece46b507bd69c9ac15fe5f71f8
mapmd5	0636a968d92e9f19193f329386bfddc2

Annotations for experiment:

term enrichment score

Term	Score
bodega bay	0.648649
zostera marina	0.478261
marine eelgrass	0.478261
ocean	0.117073
LOWER IN root	0.114286
root	0.109589
LOWER IN leaf	0.100000
LOWER IN sediment	0.100000
LOWER IN marine sediment	0.100000
marine sediment	0.085714
leaf	0.075949
mitochondrion	0.074074
pacific ocean	0.072727
state of california	0.058680
sediment	0.058252
sea water	0.040404
water	0.032520

Fraction of dbbact annotations with this term covered by the query

Term	Score
bodega bay	0.500000
zostera marina	0.333333
marine eelgrass	0.333333
LOWER IN leaf	0.142857
LOWER IN sediment	0.142857
LOWER IN marine sediment	0.142857
LOWER IN root	0.090909
mitochondrion	0.071429
root	0.066667
ocean	0.062500
marine sediment	0.052632
pacific ocean	0.047619
leaf	0.045455
sediment	0.033333
state of california	0.030303
sea water	0.023256
water	0.018182

Fraction of annotations for the query sequences containing the term

Term	Score
state of california	0.923077
bodega bay	0.923077
ocean	0.923077
zostera marina	0.846154
marine eelgrass	0.846154
root	0.307692
sediment	0.230769
marine sediment	0.230769
leaf	0.230769
LOWER IN root	0.153846
pacific ocean	0.153846
water	0.153846
sea water	0.153846
LOWER IN leaf	0.076923
LOWER IN sediment	0.076923
LOWER IN marine sediment	0.076923
mitochondrion	0.076923

Number of experiments associating the term to the sequence

Term	Score
state of california	1.000000
bodega bay	1.000000
ocean	1.000000
zostera marina	1.000000
marine eelgrass	1.000000
sediment	1.000000
marine sediment	1.000000
LOWER IN root	1.000000
pacific ocean	1.000000
water	1.000000
sea water	1.000000
LOWER IN leaf	1.000000
root	1.000000
LOWER IN sediment	1.000000
LOWER IN marine sediment	1.000000
leaf	1.000000
mitochondrion	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
236	amnon	marine eelgrass mitochondria (other zostera marina, mitochondrion, marine eelgrass)	2017-11-07	v4	1 / 1	approved	No
236	amnon	dominant state of california, bodega bay, ocean, zostera marina, marine eelgrass, leaf	2017-11-07	v4	1 / 4	approved	No
236	amnon	dominant state of california, bodega bay, ocean, zostera marina, marine eelgrass, sediment, marine sediment	2017-11-07	v4	1 / 5	approved	No
236	amnon	dominant state of california, bodega bay, ocean, zostera marina, marine eelgrass, root	2017-11-07	v4	1 / 8	approved	No
236	amnon	dominant ocean, pacific ocean, state of california, bodega bay, water, sea water	2017-11-07	v4	1 / 21	approved	No
236	amnon	high in leaf compared to root in state of california bodega bay ocean zostera marina marine eelgrass	2017-11-07	v4	1 / 287	approved	No
236	amnon	common state of california, bodega bay, ocean, zostera marina, marine eelgrass, root	2017-11-07	v4	1 / 483	approved	No
236	amnon	common state of california, bodega bay, ocean, zostera marina, marine eelgrass, leaf	2017-11-07	v4	1 / 505	approved	No
236	amnon	high in root compared to sediment marine sediment in state of california bodega bay ocean zostera marina marine eelgrass	2017-11-07	v4	1 / 674	approved	No
236	amnon	high in root compared to leaf in state of california bodega bay ocean zostera marina marine eelgrass	2017-11-07	v4	1 / 819	approved	No
236	amnon	common ocean, state of california, pacific ocean, bodega bay, water, sea water	2017-11-07	v4	1 / 1156	approved	No
236	amnon	common state of california, bodega bay, ocean, zostera marina, marine eelgrass, sediment, marine sediment	2017-11-07	v4	1 / 1904	approved	No
236	amnon	high in sediment marine sediment compared to root in state of california bodega bay ocean zostera marina marine eelgrass	2017-11-07	v4	1 / 2745	approved	No

Problems / suggestions? Please visit the dbBact forum