Experiment ID: 2349

Field Description
nameanalysis of lung microbiota in bronchoalveolar lavage, protected brush and sputum samples from subjects with mild-to-moderate cystic fibrosis lung disease (4778801) - gpt-5
proj_id4778801
sraprjna288589
date_of_upload05/03/2026 06:50
doi10.1371/journal.pone.0149998
modelgpt-5
sample_groups_version18
dbbact_id646
dbbact_linkhttps://dbbact.org/exp_info/646
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
protected brush sampling0.444444
LOWER IN protected brush sampling0.333333
LOWER IN bronchoalveolar lavage0.285714
cystic fibrosis0.285714
sputum0.260870
bronchoalveolar lavage0.210526
lung0.181818
hospital0.181818
human adult stage0.045455
united states of america0.006645
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN protected brush sampling1.000000
protected brush sampling0.500000
LOWER IN bronchoalveolar lavage0.500000
cystic fibrosis0.166667
sputum0.166667
bronchoalveolar lavage0.142857
lung0.100000
hospital0.100000
human adult stage0.023256
united states of america0.003333
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
lung disease2.000000
cystic fibrosis1.000000
lung1.000000
united states of america1.000000
lebanon1.000000
hanover1.000000
clinically stable1.000000
human adult stage1.000000
woods hole1.000000
homo sapiens1.000000
hospital1.000000
sputum0.600000
expectorated sample0.600000
bronchoalveolar lavage0.400000
protected brush sampling0.400000
mucus plug0.400000
LOWER IN mucus plug0.200000
LOWER IN bronchoalveolar lavage0.200000
LOWER IN protected brush sampling0.200000
Number of experiments associating the term to the sequence
TermScore
cystic fibrosis1.000000
lung1.000000
united states of america1.000000
lebanon1.000000
hanover1.000000
sputum1.000000
clinically stable1.000000
human adult stage1.000000
woods hole1.000000
homo sapiens1.000000
lung disease1.000000
expectorated sample1.000000
hospital1.000000
bronchoalveolar lavage1.000000
protected brush sampling1.000000
mucus plug1.000000
LOWER IN mucus plug1.000000
LOWER IN bronchoalveolar lavage1.000000
LOWER IN protected brush sampling1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2349gpt-5Lower airway sampling vs sputum in cystic fibrosis (invasive vs expectorated) ( high in sputum expectorated sample compared to mucus plug bronchoalveolar lavage protected brush sampling in cystic fibrosis lung united states of america lebanon hanover woods hole clinically stable human adult stage homo sapiens lung disease lung disease hospital )2026-03-05v41 / 11pendingNo
2349gpt-5Human cystic fibrosis protected brush (PB) lung samples + Human cystic fibrosis bronchoalveolar lavage (BALF) samples (common bronchoalveolar lavage, cystic fibrosis, lung, protected brush sampling, united states of america, hanover, lebanon, woods hole, clinically stable, human adult stage, mucus plug, homo sapiens, lung disease, lung disease, hospital)2026-03-05v41 / 12pendingNo
2349gpt-5Human cystic fibrosis protected brush (PB) lung samples + Human cystic fibrosis bronchoalveolar lavage (BALF) samples (dominant bronchoalveolar lavage, cystic fibrosis, lung, protected brush sampling, united states of america, hanover, lebanon, woods hole, clinically stable, human adult stage, mucus plug, homo sapiens, lung disease, lung disease, hospital)2026-03-05v41 / 13pendingNo
2349gpt-5Human cystic fibrosis sputum samples (dominant cystic fibrosis, lung, united states of america, lebanon, hanover, sputum, clinically stable, human adult stage, woods hole, homo sapiens, lung disease, lung disease, expectorated sample, hospital)2026-03-05v41 / 21pendingNo
2349gpt-5Human cystic fibrosis sputum samples (common cystic fibrosis, lung, united states of america, lebanon, hanover, sputum, clinically stable, human adult stage, woods hole, homo sapiens, lung disease, lung disease, expectorated sample, hospital)2026-03-05v41 / 54pendingNo

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