Experiment ID: 2348

Field Description
namethe microbiome of uncontacted amerindians (4517851) - gpt-5
proj_id4517851
sraera387449
date_of_upload05/03/2026 06:40
doi10.1126/sciadv.1500183
modelgpt-5
sample_groups_version18
dbbact_id75
dbbact_linkhttps://dbbact.org/exp_info/75
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
LOWER IN tobacco0.352941
outdoor0.344828
tobacco0.344828
venezuela0.333333
LOWER IN outdoor0.260870
village0.200000
LOWER IN nicotine dependence0.171429
nicotine dependence0.169492
LOWER IN oral cavity0.127660
oral cavity0.047847
LOWER IN saliva0.045802
LOWER IN feces0.031414
human adult stage0.023256
saliva0.014728
homo sapiens0.002591
feces0.002289
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN tobacco1.000000
LOWER IN outdoor0.333333
outdoor0.333333
tobacco0.333333
venezuela0.200000
LOWER IN nicotine dependence0.142857
village0.111111
nicotine dependence0.111111
LOWER IN oral cavity0.090909
LOWER IN saliva0.025641
oral cavity0.025641
LOWER IN feces0.016949
human adult stage0.011765
saliva0.007519
homo sapiens0.001297
feces0.001148
Fraction of annotations for the query sequences containing the term
TermScore
amazonas state1.000000
venezuela1.000000
homo sapiens1.000000
village1.000000
community1.000000
population1.000000
human adult stage1.000000
feces0.357143
outdoor0.357143
skin of forearm0.357143
saliva0.357143
nicotine dependence0.357143
oral cavity0.357143
tobacco0.357143
LOWER IN saliva0.214286
LOWER IN nicotine dependence0.214286
LOWER IN oral cavity0.214286
LOWER IN tobacco0.214286
LOWER IN outdoor0.214286
LOWER IN skin of forearm0.214286
LOWER IN feces0.214286
Number of experiments associating the term to the sequence
TermScore
feces1.000000
LOWER IN saliva1.000000
LOWER IN nicotine dependence1.000000
LOWER IN oral cavity1.000000
LOWER IN tobacco1.000000
amazonas state1.000000
venezuela1.000000
homo sapiens1.000000
village1.000000
community1.000000
population1.000000
human adult stage1.000000
LOWER IN outdoor1.000000
LOWER IN skin of forearm1.000000
outdoor1.000000
skin of forearm1.000000
saliva1.000000
nicotine dependence1.000000
oral cavity1.000000
tobacco1.000000
LOWER IN feces1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2348gpt-5Yanomami fecal (stool) 16S V2 samples (dominant amazonas state, feces, venezuela, homo sapiens, village, community, population, human adult stage)2026-03-05v11 / 21pendingNo
2348gpt-5Yanomami forearm skin 16S V2 samples (dominant amazonas state, venezuela, homo sapiens, village, outdoor, community, population, human adult stage, skin of forearm)2026-03-05v11 / 21pendingNo
2348gpt-5Yanomami oral (saliva) 16S V2 samples (dominant amazonas state, venezuela, homo sapiens, nicotine dependence, village, community, saliva, population, oral cavity, tobacco, human adult stage)2026-03-05v11 / 23pendingNo
2348gpt-5Body site differentiation within Yanomami: oral vs skin microbiome (16S V2) ( high in saliva nicotine dependence oral cavity tobacco compared to outdoor skin of forearm in amazonas state venezuela homo sapiens village community population human adult stage )2026-03-05v11 / 44pendingNo
2348gpt-5Yanomami oral (saliva) 16S V2 samples (common amazonas state, venezuela, homo sapiens, nicotine dependence, village, community, saliva, population, oral cavity, tobacco, human adult stage)2026-03-05v11 / 56pendingNo
2348gpt-5Yanomami forearm skin 16S V2 samples (common amazonas state, venezuela, homo sapiens, village, outdoor, community, population, human adult stage, skin of forearm)2026-03-05v11 / 62pendingNo
2348gpt-5Non-gut Yanomami microbiomes (oral+skin) vs gut (16S V2) ( high in nicotine dependence outdoor saliva oral cavity tobacco skin of forearm compared to feces in amazonas state venezuela homo sapiens village community population human adult stage )2026-03-05v11 / 63pendingNo
2348gpt-5Yanomami fecal (stool) 16S V2 samples (common amazonas state, feces, venezuela, homo sapiens, village, community, population, human adult stage)2026-03-05v11 / 67pendingNo
2348gpt-5Body site differentiation within Yanomami: gut vs skin microbiome (16S V2) ( high in outdoor skin of forearm compared to feces in amazonas state venezuela homo sapiens village community population human adult stage )2026-03-05v11 / 84pendingNo
2348gpt-5Body site differentiation within Yanomami: gut vs oral microbiome (16S V2) ( high in saliva nicotine dependence oral cavity tobacco compared to feces in amazonas state venezuela homo sapiens village community population human adult stage )2026-03-05v11 / 94pendingNo
2348gpt-5Body site differentiation within Yanomami: oral vs skin microbiome (16S V2) ( high in outdoor skin of forearm compared to saliva nicotine dependence oral cavity tobacco in amazonas state venezuela homo sapiens village community population human adult stage )2026-03-05v11 / 128pendingNo
2348gpt-5Body site differentiation within Yanomami: gut vs skin microbiome (16S V2) ( high in feces compared to outdoor skin of forearm in amazonas state venezuela homo sapiens village community population human adult stage )2026-03-05v11 / 148pendingNo
2348gpt-5Non-gut Yanomami microbiomes (oral+skin) vs gut (16S V2) ( high in feces compared to nicotine dependence outdoor saliva oral cavity tobacco skin of forearm in amazonas state venezuela homo sapiens village community population human adult stage )2026-03-05v11 / 215pendingNo
2348gpt-5Body site differentiation within Yanomami: gut vs oral microbiome (16S V2) ( high in feces compared to saliva nicotine dependence oral cavity tobacco in amazonas state venezuela homo sapiens village community population human adult stage )2026-03-05v11 / 219pendingNo

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