Experiment ID: 2320

Field Description
namethe impact of vegan production on the kimchi microbiome (5965696) - gpt-5
proj_id5965696
sraprjna418790
date_of_upload05/03/2026 05:59
doi10.1016/j.fm.2018.04.001
modelgpt-5
sample_groups_version18
dbbact_id311
dbbact_linkhttps://dbbact.org/exp_info/311
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
anaerobic fermentation0.666667
day 30.666667
food processing factory0.666667
commercial product0.666667
aerobic fermentation0.666667
vegan kimchi0.545455
day 00.500000
days 1-20.500000
kimchi0.500000
day 10.500000
non vegan kimchi0.444444
fish sauce0.363636
LOWER IN fish sauce0.333333
LOWER IN non vegan kimchi0.285714
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN fish sauce1.000000
anaerobic fermentation0.500000
day 30.500000
vegan kimchi0.500000
food processing factory0.500000
commercial product0.500000
aerobic fermentation0.500000
non vegan kimchi0.500000
LOWER IN non vegan kimchi0.500000
day 00.333333
days 1-20.333333
kimchi0.333333
day 10.333333
fish sauce0.333333
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
anaerobic fermentation1.000000
providence1.000000
day 01.000000
day 31.000000
finished jar1.000000
days 1-21.000000
kimchi1.000000
food processing factory1.000000
commercial product1.000000
fermentation broth1.000000
room temperature fermentation1.000000
aerobic fermentation1.000000
day 11.000000
temperature 21.1-23.9 celsius1.000000
united states of america1.000000
miso paste0.600000
vegan kimchi0.600000
fish sauce0.400000
non vegan kimchi0.400000
non-vegan kimchi0.400000
LOWER IN non-vegan kimchi0.200000
LOWER IN fish sauce0.200000
LOWER IN non vegan kimchi0.200000
Number of experiments associating the term to the sequence
TermScore
anaerobic fermentation1.000000
providence1.000000
miso paste1.000000
day 01.000000
day 31.000000
finished jar1.000000
days 1-21.000000
kimchi1.000000
vegan kimchi1.000000
food processing factory1.000000
commercial product1.000000
fermentation broth1.000000
room temperature fermentation1.000000
aerobic fermentation1.000000
day 11.000000
temperature 21.1-23.9 celsius1.000000
united states of america1.000000
fish sauce1.000000
non vegan kimchi1.000000
non-vegan kimchi1.000000
LOWER IN non-vegan kimchi1.000000
LOWER IN fish sauce1.000000
LOWER IN non vegan kimchi1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2320gpt-5Vegan vs non-vegan kimchi fermentation (all timepoints and jars) ( high in miso paste vegan kimchi compared to non-vegan kimchi fish sauce non vegan kimchi in anaerobic fermentation providence day 0 day 3 finished jar days 1-2 kimchi food processing factory commercial product fermentation broth room temperature fermentation aerobic fermentation day 1 temperature 21.1-23.9 celsius united states of america )2026-03-05v41 / 3pendingNo
2320gpt-5Vegan kimchi fermentation samples (dominant anaerobic fermentation, , providence, miso paste, day 0, day 3, finished jar, days 1-2, kimchi, vegan kimchi, food processing factory, commercial product, fermentation broth, room temperature fermentation, aerobic fermentation, day 1, temperature 21.1-23.9 celsius, united states of america)2026-03-05v41 / 4pendingNo
2320gpt-5Non-vegan kimchi fermentation samples (common providence, days 1-2, commercial product, fermentation broth, kimchi, food processing factory, aerobic fermentation, united states of america, anaerobic fermentation, day 0, day 3, finished jar, room temperature fermentation, fish sauce, , non vegan kimchi, non-vegan kimchi, day 1, temperature 21.1-23.9 celsius)2026-03-05v41 / 8pendingNo
2320gpt-5Vegan kimchi fermentation samples (common anaerobic fermentation, , providence, miso paste, day 0, day 3, finished jar, days 1-2, kimchi, vegan kimchi, food processing factory, commercial product, fermentation broth, room temperature fermentation, aerobic fermentation, day 1, temperature 21.1-23.9 celsius, united states of america)2026-03-05v41 / 9pendingNo
2320gpt-5Non-vegan kimchi fermentation samples (dominant providence, days 1-2, commercial product, fermentation broth, kimchi, food processing factory, aerobic fermentation, united states of america, anaerobic fermentation, day 0, day 3, finished jar, room temperature fermentation, fish sauce, , non vegan kimchi, non-vegan kimchi, day 1, temperature 21.1-23.9 celsius)2026-03-05v41 / 9pendingNo

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