Experiment ID: 2311

Field Description
namenew york city house mice (mus musculus) as potential reservoirs for pathogenic bacteria and antimicrobial resistance determinants (5904414) - gpt-5
proj_id5904414
srasrp136544
date_of_upload05/03/2026 05:57
doi10.1128/mbio.00624-18
modelgpt-5
sample_groups_version18
dbbact_id337
dbbact_linkhttps://dbbact.org/exp_info/337
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
urban biome0.400000
new york city0.250000
mus musculus0.027027
united states of america0.006645
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
urban biome0.250000
new york city0.142857
mus musculus0.013699
united states of america0.003333
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
new york city1.000000
room1.000000
feces1.000000
united states of america1.000000
residential building1.000000
mus musculus1.000000
urban biome1.000000
manhattan borough0.666667
queens borough0.416667
fresh meadows0.416667
chelsea0.416667
laconia0.333333
bronx borough0.333333
upper west side0.333333
LOWER IN chelsea0.250000
LOWER IN queens borough0.250000
LOWER IN fresh meadows0.250000
LOWER IN laconia0.166667
LOWER IN bronx borough0.166667
LOWER IN upper west side0.166667
LOWER IN manhattan borough0.166667
Number of experiments associating the term to the sequence
TermScore
queens borough1.000000
fresh meadows1.000000
LOWER IN chelsea1.000000
LOWER IN laconia1.000000
LOWER IN bronx borough1.000000
LOWER IN upper west side1.000000
LOWER IN manhattan borough1.000000
new york city1.000000
room1.000000
feces1.000000
united states of america1.000000
residential building1.000000
mus musculus1.000000
urban biome1.000000
laconia1.000000
bronx borough1.000000
upper west side1.000000
manhattan borough1.000000
chelsea1.000000
LOWER IN queens borough1.000000
LOWER IN fresh meadows1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2311gpt-5Upper West Side (M2) house mouse fecal samples + Laconia (X1) house mouse fecal samples (dominant new york city, room, feces, united states of america, residential building, laconia, urban biome, bronx borough, upper west side, manhattan borough, mus musculus)2026-03-05v41 / 14pendingNo
2311gpt-5Fresh Meadows (Q1) house mouse fecal samples (dominant new york city, room, feces, united states of america, fresh meadows, mus musculus, residential building, urban biome, queens borough)2026-03-05v41 / 16pendingNo
2311gpt-5Chelsea (M3) house mouse fecal samples (dominant new york city, room, feces, chelsea, united states of america, manhattan borough, mus musculus, residential building, urban biome)2026-03-05v41 / 17pendingNo
2311gpt-5Upper West Side (M2) house mouse fecal samples + Laconia (X1) house mouse fecal samples (common new york city, room, feces, united states of america, residential building, laconia, urban biome, bronx borough, upper west side, manhattan borough, mus musculus)2026-03-05v41 / 140pendingNo
2311gpt-5High-density Manhattan site (Chelsea, M3) vs other NYC neighborhoods ( high in chelsea compared to laconia fresh meadows bronx borough upper west side queens borough in new york city room feces united states of america residential building manhattan borough mus musculus urban biome )2026-03-05v41 / 146pendingNo
2311gpt-5Queens (Fresh Meadows, Q1) vs non-Queens NYC neighborhoods ( high in chelsea laconia bronx borough upper west side manhattan borough compared to queens borough fresh meadows in new york city room feces united states of america residential building mus musculus urban biome )2026-03-05v41 / 150pendingNo
2311gpt-5Chelsea (M3) vs Fresh Meadows (Q1) house mouse gut microbiomes ( high in chelsea manhattan borough compared to queens borough fresh meadows in new york city room feces united states of america residential building mus musculus urban biome )2026-03-05v41 / 159pendingNo
2311gpt-5Chelsea (M3) house mouse fecal samples (common new york city, room, feces, chelsea, united states of america, manhattan borough, mus musculus, residential building, urban biome)2026-03-05v41 / 177pendingNo
2311gpt-5Fresh Meadows (Q1) house mouse fecal samples (common new york city, room, feces, united states of america, fresh meadows, mus musculus, residential building, urban biome, queens borough)2026-03-05v41 / 214pendingNo
2311gpt-5High-density Manhattan site (Chelsea, M3) vs other NYC neighborhoods ( high in laconia fresh meadows bronx borough upper west side queens borough compared to chelsea in new york city room feces united states of america residential building manhattan borough mus musculus urban biome )2026-03-05v41 / 323pendingNo
2311gpt-5Chelsea (M3) vs Fresh Meadows (Q1) house mouse gut microbiomes ( high in queens borough fresh meadows compared to chelsea manhattan borough in new york city room feces united states of america residential building mus musculus urban biome )2026-03-05v41 / 362pendingNo
2311gpt-5Queens (Fresh Meadows, Q1) vs non-Queens NYC neighborhoods ( high in queens borough fresh meadows compared to chelsea laconia bronx borough upper west side manhattan borough in new york city room feces united states of america residential building mus musculus urban biome )2026-03-05v41 / 369pendingNo

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