Experiment ID: 2307

Field Description
namethe populus holobiont: dissecting the effects of plant niches and genotype on the microbiome (5810025) - gpt-5
proj_id5810025
sraprjna385484
date_of_upload05/03/2026 05:54
doi10.1186/s40168-018-0413-8
modelgpt-5
sample_groups_version18
dbbact_id462
dbbact_linkhttps://dbbact.org/exp_info/462
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
field0.666667
populus deltoides0.457143
root structure0.387097
na0.387097
loam0.344828
state of tennessee0.333333
depth (soil) 0-30 cm0.256410
LOWER IN populus deltoides0.240000
LOWER IN 0.205128
LOWER IN na0.190476
LOWER IN loam0.190476
bulk soil0.185185
LOWER IN root structure0.173913
LOWER IN depth (soil) 0-30 cm0.160000
LOWER IN bulk soil0.148148
LOWER IN leaf0.121212
leaf0.079470
LOWER IN soil0.075472
LOWER IN rhizosphere0.051282
rhizosphere0.037657
soil0.018904
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN na1.000000
LOWER IN loam1.000000
loam0.500000
root structure0.500000
field0.500000
populus deltoides0.500000
LOWER IN populus deltoides0.500000
LOWER IN root structure0.500000
na0.500000
LOWER IN depth (soil) 0-30 cm0.333333
depth (soil) 0-30 cm0.250000
LOWER IN bulk soil0.250000
LOWER IN 0.200000
state of tennessee0.200000
bulk soil0.142857
LOWER IN leaf0.142857
LOWER IN soil0.058824
LOWER IN rhizosphere0.050000
leaf0.045455
rhizosphere0.019608
soil0.009804
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
field1.000000
united states of america1.000000
state of tennessee1.000000
august 20141.000000
blount county1.000000
genotype0.500000
rhizosphere environment0.473684
rhizosphere0.473684
populus trichocarpa x populus deltoides0.421053
populus deltoides0.421053
shallow depth 0-30 cm0.315789
deep depth 30-75 cm0.315789
root structure0.315789
heartwood0.315789
xylem0.315789
na0.315789
phloem0.315789
bark0.315789
petiole0.315789
leaf0.315789
cambium0.315789
canopy0.315789
inceptisol0.263158
depth (soil) 30-75 cm0.263158
loam0.263158
depth (soil) 0-30 cm0.263158
emory series0.263158
soil0.263158
b horizon silty clay loam0.263158
bulk soil0.263158
LOWER IN 0.210526
LOWER IN populus deltoides0.157895
LOWER IN populus trichocarpa x populus deltoides0.157895
marssonina brunnea infection0.157895
septoria infection0.157895
septoria canker0.157895
LOWER IN genotype0.131579
LOWER IN heartwood0.105263
LOWER IN canopy0.105263
LOWER IN xylem0.105263
LOWER IN na0.105263
LOWER IN marssonina brunnea infection0.105263
LOWER IN phloem0.105263
LOWER IN bark0.105263
LOWER IN petiole0.105263
LOWER IN leaf0.105263
LOWER IN septoria infection0.105263
LOWER IN cambium0.105263
LOWER IN septoria canker0.105263
LOWER IN shallow depth 0-30 cm0.105263
LOWER IN deep depth 30-75 cm0.105263
LOWER IN root structure0.105263
LOWER IN inceptisol0.105263
LOWER IN depth (soil) 30-75 cm0.105263
LOWER IN loam0.105263
LOWER IN depth (soil) 0-30 cm0.105263
LOWER IN emory series0.105263
LOWER IN soil0.105263
LOWER IN b horizon silty clay loam0.105263
LOWER IN bulk soil0.105263
LOWER IN rhizosphere environment0.052632
LOWER IN rhizosphere0.052632
Number of experiments associating the term to the sequence
TermScore
shallow depth 0-30 cm1.000000
deep depth 30-75 cm1.000000
inceptisol1.000000
depth (soil) 30-75 cm1.000000
loam1.000000
depth (soil) 0-30 cm1.000000
rhizosphere environment1.000000
emory series1.000000
rhizosphere1.000000
soil1.000000
b horizon silty clay loam1.000000
bulk soil1.000000
root structure1.000000
LOWER IN 1.000000
LOWER IN heartwood1.000000
LOWER IN canopy1.000000
LOWER IN xylem1.000000
LOWER IN na1.000000
LOWER IN marssonina brunnea infection1.000000
LOWER IN phloem1.000000
LOWER IN bark1.000000
LOWER IN petiole1.000000
LOWER IN leaf1.000000
LOWER IN septoria infection1.000000
LOWER IN cambium1.000000
LOWER IN septoria canker1.000000
field1.000000
united states of america1.000000
state of tennessee1.000000
populus trichocarpa x populus deltoides1.000000
august 20141.000000
blount county1.000000
genotype1.000000
populus deltoides1.000000
LOWER IN shallow depth 0-30 cm1.000000
LOWER IN deep depth 30-75 cm1.000000
LOWER IN populus deltoides1.000000
LOWER IN root structure1.000000
LOWER IN populus trichocarpa x populus deltoides1.000000
LOWER IN genotype1.000000
heartwood1.000000
xylem1.000000
na1.000000
phloem1.000000
bark1.000000
petiole1.000000
leaf1.000000
cambium1.000000
canopy1.000000
LOWER IN inceptisol1.000000
LOWER IN depth (soil) 30-75 cm1.000000
LOWER IN loam1.000000
LOWER IN depth (soil) 0-30 cm1.000000
LOWER IN rhizosphere environment1.000000
LOWER IN emory series1.000000
LOWER IN rhizosphere1.000000
LOWER IN soil1.000000
LOWER IN b horizon silty clay loam1.000000
LOWER IN bulk soil1.000000
marssonina brunnea infection1.000000
septoria infection1.000000
septoria canker1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2307gpt-5Populus deltoides soil-associated bacterial communities (dominant field, united states of america, bulk soil, state of tennessee, inceptisol, depth (soil) 30-75 cm, loam, august 2014, depth (soil) 0-30 cm, rhizosphere environment, emory series, soil, blount county, b horizon silty clay loam, rhizosphere)2026-03-05v41 / 4pendingNo
2307gpt-5Populus trichocarpa × deltoides hybrid soil-associated bacterial communities (dominant field, united states of america, bulk soil, state of tennessee, inceptisol, depth (soil) 30-75 cm, loam, august 2014, depth (soil) 0-30 cm, rhizosphere environment, genotype, emory series, soil, blount county, b horizon silty clay loam, rhizosphere)2026-03-05v41 / 4pendingNo
2307gpt-5Populus deltoides stem-associated bacterial communities (dominant field, heartwood, united states of america, state of tennessee, xylem, na, populus deltoides, august 2014, phloem, bark, blount county, cambium)2026-03-05v41 / 5pendingNo
2307gpt-5Populus deltoides root-associated bacterial communities (dominant field, united states of america, state of tennessee, deep depth 30-75 cm, shallow depth 0-30 cm, populus deltoides, august 2014, rhizosphere environment, blount county, , rhizosphere, root structure)2026-03-05v41 / 6pendingNo
2307gpt-5Populus trichocarpa × deltoides hybrid root-associated bacterial communities (dominant field, united states of america, state of tennessee, deep depth 30-75 cm, shallow depth 0-30 cm, populus trichocarpa x populus deltoides, august 2014, rhizosphere environment, genotype, blount county, , rhizosphere, root structure)2026-03-05v41 / 9pendingNo
2307gpt-5Populus deltoides leaf-associated bacterial communities (dominant , field, united states of america, state of tennessee, populus deltoides, august 2014, petiole, blount county, leaf, canopy)2026-03-05v41 / 11pendingNo
2307gpt-5Populus trichocarpa × deltoides hybrid stem-associated bacterial communities (dominant field, heartwood, united states of america, state of tennessee, xylem, na, populus trichocarpa x populus deltoides, august 2014, phloem, bark, blount county, genotype, cambium, septoria canker)2026-03-05v41 / 13pendingNo
2307gpt-5Populus trichocarpa × deltoides hybrid leaf-associated bacterial communities (dominant , field, united states of america, state of tennessee, marssonina brunnea infection, populus trichocarpa x populus deltoides, august 2014, genotype, petiole, blount county, leaf, septoria infection, canopy)2026-03-05v41 / 21pendingNo
2307gpt-5Populus deltoides stem-associated bacterial communities (common field, heartwood, united states of america, state of tennessee, xylem, na, populus deltoides, august 2014, phloem, bark, blount county, cambium)2026-03-05v41 / 30pendingNo
2307gpt-5Populus trichocarpa × deltoides hybrid leaf-associated bacterial communities (common , field, united states of america, state of tennessee, marssonina brunnea infection, populus trichocarpa x populus deltoides, august 2014, genotype, petiole, blount county, leaf, septoria infection, canopy)2026-03-05v41 / 31pendingNo
2307gpt-5Populus deltoides leaf-associated bacterial communities (common , field, united states of america, state of tennessee, populus deltoides, august 2014, petiole, blount county, leaf, canopy)2026-03-05v41 / 38pendingNo
2307gpt-5Populus deltoides root-associated bacterial communities (common field, united states of america, state of tennessee, deep depth 30-75 cm, shallow depth 0-30 cm, populus deltoides, august 2014, rhizosphere environment, blount county, , rhizosphere, root structure)2026-03-05v41 / 40pendingNo
2307gpt-5Host genotype effect on leaf microbiomes (Populus deltoides vs hybrid) ( high in genotype marssonina brunnea infection populus trichocarpa x populus deltoides septoria infection compared to populus deltoides in field united states of america state of tennessee august 2014 petiole blount county leaf canopy )2026-03-05v41 / 50pendingNo
2307gpt-5Populus trichocarpa × deltoides hybrid stem-associated bacterial communities (common field, heartwood, united states of america, state of tennessee, xylem, na, populus trichocarpa x populus deltoides, august 2014, phloem, bark, blount county, genotype, cambium, septoria canker)2026-03-05v41 / 62pendingNo
2307gpt-5Populus trichocarpa × deltoides hybrid root-associated bacterial communities (common field, united states of america, state of tennessee, deep depth 30-75 cm, shallow depth 0-30 cm, populus trichocarpa x populus deltoides, august 2014, rhizosphere environment, genotype, blount county, , rhizosphere, root structure)2026-03-05v41 / 84pendingNo
2307gpt-5Root endosphere vs surrounding soil in Populus deltoides ( high in shallow depth 0-30 cm deep depth 30-75 cm populus deltoides root structure compared to inceptisol depth (soil) 30-75 cm loam depth (soil) 0-30 cm emory series soil b horizon silty clay loam bulk soil in field united states of america state of tennessee august 2014 rhizosphere environment blount county rhizosphere )2026-03-05v41 / 84pendingNo
2307gpt-5Tissue niche partitioning in Populus hybrid: leaf vs stem ( high in marssonina brunnea infection petiole leaf septoria infection canopy compared to heartwood xylem na phloem bark cambium septoria canker in field united states of america state of tennessee populus trichocarpa x populus deltoides august 2014 blount county genotype )2026-03-05v41 / 106pendingNo
2307gpt-5Root endosphere vs surrounding soil in Populus hybrid ( high in shallow depth 0-30 cm deep depth 30-75 cm populus trichocarpa x populus deltoides root structure compared to inceptisol depth (soil) 30-75 cm loam depth (soil) 0-30 cm emory series soil b horizon silty clay loam bulk soil in field united states of america state of tennessee august 2014 rhizosphere environment genotype blount county rhizosphere )2026-03-05v41 / 119pendingNo
2307gpt-5Host genotype effect on root microbiomes (Populus deltoides vs hybrid) ( high in populus deltoides compared to genotype populus trichocarpa x populus deltoides in field united states of america state of tennessee deep depth 30-75 cm shallow depth 0-30 cm august 2014 rhizosphere environment blount county rhizosphere root structure )2026-03-05v41 / 160pendingNo
2307gpt-5Host genotype effect on root microbiomes (Populus deltoides vs hybrid) ( high in genotype populus trichocarpa x populus deltoides compared to populus deltoides in field united states of america state of tennessee deep depth 30-75 cm shallow depth 0-30 cm august 2014 rhizosphere environment blount county rhizosphere root structure )2026-03-05v41 / 162pendingNo
2307gpt-5Host genotype effect on stem microbiomes (Populus deltoides vs hybrid) ( high in populus deltoides compared to genotype populus trichocarpa x populus deltoides septoria canker in field heartwood united states of america state of tennessee xylem na august 2014 phloem bark blount county cambium )2026-03-05v41 / 163pendingNo
2307gpt-5Genotype effect is stronger aboveground? (Combine leaf+stem: deltoides vs hybrid) ( high in marssonina brunnea infection populus trichocarpa x populus deltoides genotype septoria infection septoria canker compared to populus deltoides in field heartwood united states of america state of tennessee xylem na august 2014 phloem bark petiole blount county leaf cambium canopy )2026-03-05v41 / 183pendingNo
2307gpt-5Host genotype effect on stem microbiomes (Populus deltoides vs hybrid) ( high in genotype populus trichocarpa x populus deltoides septoria canker compared to populus deltoides in field heartwood united states of america state of tennessee xylem na august 2014 phloem bark blount county cambium )2026-03-05v41 / 198pendingNo
2307gpt-5Tissue niche partitioning in Populus deltoides: leaf vs stem ( high in heartwood xylem na phloem bark cambium compared to petiole leaf canopy in field united states of america state of tennessee populus deltoides august 2014 blount county )2026-03-05v41 / 250pendingNo
2307gpt-5Tissue niche partitioning in Populus hybrid: leaf vs stem ( high in heartwood xylem na phloem bark cambium septoria canker compared to marssonina brunnea infection petiole leaf septoria infection canopy in field united states of america state of tennessee populus trichocarpa x populus deltoides august 2014 blount county genotype )2026-03-05v41 / 374pendingNo
2307gpt-5Within Populus hybrid: Aboveground (leaf+stem) vs belowground (root+soil) microbiomes ( high in heartwood canopy xylem na marssonina brunnea infection phloem bark petiole leaf septoria infection cambium septoria canker compared to shallow depth 0-30 cm deep depth 30-75 cm inceptisol depth (soil) 30-75 cm loam depth (soil) 0-30 cm rhizosphere environment emory series rhizosphere soil b horizon silty clay loam bulk soil root structure in field united states of america state of tennessee populus trichocarpa x populus deltoides august 2014 blount county genotype )2026-03-05v41 / 441pendingNo
2307gpt-5Host genotype effect on leaf microbiomes (Populus deltoides vs hybrid) ( high in populus deltoides compared to genotype marssonina brunnea infection populus trichocarpa x populus deltoides septoria infection in field united states of america state of tennessee august 2014 petiole blount county leaf canopy )2026-03-05v41 / 541pendingNo
2307gpt-5Tissue niche partitioning in Populus deltoides: leaf vs stem ( high in petiole leaf canopy compared to heartwood xylem na phloem bark cambium in field united states of america state of tennessee populus deltoides august 2014 blount county )2026-03-05v41 / 559pendingNo
2307gpt-5Within Populus deltoides: Aboveground (leaf+stem) vs belowground (root+soil) microbiomes ( high in heartwood xylem na phloem bark petiole leaf cambium canopy compared to shallow depth 0-30 cm deep depth 30-75 cm inceptisol depth (soil) 30-75 cm loam depth (soil) 0-30 cm rhizosphere environment emory series rhizosphere soil b horizon silty clay loam bulk soil root structure in field united states of america state of tennessee populus deltoides august 2014 blount county )2026-03-05v41 / 568pendingNo
2307gpt-5Genotype effect is stronger aboveground? (Combine leaf+stem: deltoides vs hybrid) ( high in populus deltoides compared to marssonina brunnea infection populus trichocarpa x populus deltoides genotype septoria infection septoria canker in field heartwood united states of america state of tennessee xylem na august 2014 phloem bark petiole blount county leaf cambium canopy )2026-03-05v41 / 584pendingNo
2307gpt-5Populus trichocarpa × deltoides hybrid soil-associated bacterial communities (common field, united states of america, bulk soil, state of tennessee, inceptisol, depth (soil) 30-75 cm, loam, august 2014, depth (soil) 0-30 cm, rhizosphere environment, genotype, emory series, soil, blount county, b horizon silty clay loam, rhizosphere)2026-03-05v41 / 729pendingNo
2307gpt-5Populus deltoides soil-associated bacterial communities (common field, united states of america, bulk soil, state of tennessee, inceptisol, depth (soil) 30-75 cm, loam, august 2014, depth (soil) 0-30 cm, rhizosphere environment, emory series, soil, blount county, b horizon silty clay loam, rhizosphere)2026-03-05v41 / 785pendingNo
2307gpt-5Genotype effect belowground (Combine root+soil: deltoides vs hybrid) ( high in populus deltoides compared to genotype populus trichocarpa x populus deltoides in deep depth 30-75 cm august 2014 rhizosphere environment soil united states of america state of tennessee shallow depth 0-30 cm inceptisol blount county b horizon silty clay loam bulk soil root structure loam rhizosphere field depth (soil) 30-75 cm depth (soil) 0-30 cm emory series )2026-03-05v41 / 1201pendingNo
2307gpt-5Genotype effect belowground (Combine root+soil: deltoides vs hybrid) ( high in genotype populus trichocarpa x populus deltoides compared to populus deltoides in deep depth 30-75 cm august 2014 rhizosphere environment soil united states of america state of tennessee shallow depth 0-30 cm inceptisol blount county b horizon silty clay loam bulk soil root structure loam rhizosphere field depth (soil) 30-75 cm depth (soil) 0-30 cm emory series )2026-03-05v41 / 1344pendingNo
2307gpt-5Root endosphere vs surrounding soil in Populus hybrid ( high in inceptisol depth (soil) 30-75 cm loam depth (soil) 0-30 cm emory series soil b horizon silty clay loam bulk soil compared to shallow depth 0-30 cm deep depth 30-75 cm populus trichocarpa x populus deltoides root structure in field united states of america state of tennessee august 2014 rhizosphere environment genotype blount county rhizosphere )2026-03-05v41 / 3395pendingNo
2307gpt-5Root endosphere vs surrounding soil in Populus deltoides ( high in inceptisol depth (soil) 30-75 cm loam depth (soil) 0-30 cm emory series soil b horizon silty clay loam bulk soil compared to shallow depth 0-30 cm deep depth 30-75 cm populus deltoides root structure in field united states of america state of tennessee august 2014 rhizosphere environment blount county rhizosphere )2026-03-05v41 / 3506pendingNo
2307gpt-5Within Populus deltoides: Aboveground (leaf+stem) vs belowground (root+soil) microbiomes ( high in shallow depth 0-30 cm deep depth 30-75 cm inceptisol depth (soil) 30-75 cm loam depth (soil) 0-30 cm rhizosphere environment emory series rhizosphere soil b horizon silty clay loam bulk soil root structure compared to heartwood xylem na phloem bark petiole leaf cambium canopy in field united states of america state of tennessee populus deltoides august 2014 blount county )2026-03-05v41 / 4463pendingNo
2307gpt-5Within Populus hybrid: Aboveground (leaf+stem) vs belowground (root+soil) microbiomes ( high in shallow depth 0-30 cm deep depth 30-75 cm inceptisol depth (soil) 30-75 cm loam depth (soil) 0-30 cm rhizosphere environment emory series rhizosphere soil b horizon silty clay loam bulk soil root structure compared to heartwood canopy xylem na marssonina brunnea infection phloem bark petiole leaf septoria infection cambium septoria canker in field united states of america state of tennessee populus trichocarpa x populus deltoides august 2014 blount county genotype )2026-03-05v41 / 4642pendingNo

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