Experiment ID: 2303

Field Description
namebifidobacteria or fiber protect against diet-induced microbiota-mediated colonic mucus deterioration (5764785) - gpt-5
proj_id5764785
sraprjeb20367
date_of_upload05/03/2026 05:51
doi10.1016/j.chom.2017.11.004
modelgpt-5
sample_groups_version18
dbbact_id494
dbbact_linkhttps://dbbact.org/exp_info/494
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
antimicrobial treatment0.666667
left colon0.400000
western diet0.370370
vancomycin0.333333
neomycin0.333333
ampicillin0.285714
metronidazole0.250000
LOWER IN western diet0.181818
c57bl/6j0.153846
LOWER IN antimicrobial treatment0.125000
sweden0.117647
LOWER IN neomycin0.117647
LOWER IN ampicillin0.111111
male organism0.111111
LOWER IN vancomycin0.105263
LOWER IN metronidazole0.095238
antibiotic0.090909
c57bl/60.080000
LOWER IN antibiotic0.062500
mus musculus0.027027
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
antimicrobial treatment1.000000
LOWER IN antimicrobial treatment0.500000
LOWER IN neomycin0.333333
left colon0.250000
LOWER IN western diet0.250000
LOWER IN ampicillin0.250000
western diet0.250000
vancomycin0.250000
neomycin0.250000
LOWER IN vancomycin0.200000
ampicillin0.200000
metronidazole0.166667
LOWER IN metronidazole0.142857
c57bl/6j0.083333
sweden0.062500
male organism0.058824
LOWER IN antibiotic0.055556
antibiotic0.050000
c57bl/60.041667
mus musculus0.013699
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
c57bl/61.000000
sweden1.000000
mus musculus1.000000
c57bl/6j1.000000
southern gothenburg archipelago1.000000
male organism1.000000
feces1.000000
left colon1.000000
specific pathogen-free1.000000
western diet0.714286
antibiotic0.500000
ampicillin0.500000
metronidazole0.500000
vancomycin0.500000
microbiota transplant0.500000
antimicrobial treatment0.500000
neomycin0.500000
chow diet0.285714
donor chow-fed0.285714
donor western diet-fed0.214286
LOWER IN donor chow-fed0.142857
LOWER IN western diet0.142857
LOWER IN chow diet0.142857
LOWER IN antibiotic0.071429
LOWER IN ampicillin0.071429
LOWER IN metronidazole0.071429
LOWER IN vancomycin0.071429
LOWER IN microbiota transplant0.071429
LOWER IN antimicrobial treatment0.071429
LOWER IN neomycin0.071429
LOWER IN donor western diet-fed0.071429
Number of experiments associating the term to the sequence
TermScore
c57bl/61.000000
sweden1.000000
mus musculus1.000000
c57bl/6j1.000000
southern gothenburg archipelago1.000000
male organism1.000000
feces1.000000
left colon1.000000
specific pathogen-free1.000000
chow diet1.000000
LOWER IN donor chow-fed1.000000
LOWER IN antibiotic1.000000
LOWER IN western diet1.000000
LOWER IN ampicillin1.000000
LOWER IN metronidazole1.000000
LOWER IN vancomycin1.000000
LOWER IN microbiota transplant1.000000
LOWER IN antimicrobial treatment1.000000
LOWER IN neomycin1.000000
donor chow-fed1.000000
antibiotic1.000000
western diet1.000000
ampicillin1.000000
metronidazole1.000000
vancomycin1.000000
microbiota transplant1.000000
antimicrobial treatment1.000000
neomycin1.000000
donor western diet-fed1.000000
LOWER IN chow diet1.000000
LOWER IN donor western diet-fed1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2303gpt-5Effect of microbiota source under Western diet: Chow-derived vs WSD-derived transplants ( high in donor western diet-fed compared to donor chow-fed in c57bl/6 sweden antibiotic mus musculus western diet ampicillin c57bl/6j southern gothenburg archipelago metronidazole male organism feces left colon vancomycin specific pathogen-free microbiota transplant antimicrobial treatment neomycin )2026-03-05v41 / 5pendingNo
2303gpt-5Chow-fed mouse distal colon content samples (dominant c57bl/6, sweden, mus musculus, c57bl/6j, southern gothenburg archipelago, male organism, feces, left colon, specific pathogen-free, chow diet)2026-03-05v41 / 16pendingNo
2303gpt-5Western diet-fed mouse distal colon content samples (dominant c57bl/6, sweden, mus musculus, western diet, c57bl/6j, southern gothenburg archipelago, male organism, feces, left colon, specific pathogen-free)2026-03-05v41 / 16pendingNo
2303gpt-5Western diet-fed mice receiving microbiota transplant from WSD-fed donors (WSD→WSD) (dominant donor western diet-fed, c57bl/6, sweden, antibiotic, mus musculus, western diet, ampicillin, c57bl/6j, southern gothenburg archipelago, metronidazole, male organism, feces, left colon, vancomycin, specific pathogen-free, microbiota transplant, antimicrobial treatment, neomycin)2026-03-05v41 / 16pendingNo
2303gpt-5Western diet-fed mice receiving microbiota transplant from chow-fed donors (WSD→Chow) (dominant donor chow-fed, c57bl/6, sweden, antibiotic, mus musculus, western diet, ampicillin, c57bl/6j, southern gothenburg archipelago, metronidazole, male organism, feces, left colon, vancomycin, specific pathogen-free, microbiota transplant, antimicrobial treatment, neomycin)2026-03-05v41 / 20pendingNo
2303gpt-5Effect of microbiota source under Western diet: Chow-derived vs WSD-derived transplants ( high in donor chow-fed compared to donor western diet-fed in c57bl/6 sweden antibiotic mus musculus western diet ampicillin c57bl/6j southern gothenburg archipelago metronidazole male organism feces left colon vancomycin specific pathogen-free microbiota transplant antimicrobial treatment neomycin )2026-03-05v41 / 22pendingNo
2303gpt-5Western diet vs chow diet in distal colon content ( high in western diet compared to chow diet in c57bl/6 sweden male organism mus musculus c57bl/6j southern gothenburg archipelago feces left colon specific pathogen-free )2026-03-05v41 / 99pendingNo
2303gpt-5Chow-derived microbiota under Western diet vs native chow microbiome ( high in donor chow-fed antibiotic western diet ampicillin metronidazole vancomycin microbiota transplant antimicrobial treatment neomycin compared to chow diet in c57bl/6 sweden male organism mus musculus c57bl/6j southern gothenburg archipelago feces left colon specific pathogen-free )2026-03-05v41 / 101pendingNo
2303gpt-5Western diet-fed mouse distal colon content samples (common c57bl/6, sweden, mus musculus, western diet, c57bl/6j, southern gothenburg archipelago, male organism, feces, left colon, specific pathogen-free)2026-03-05v41 / 182pendingNo
2303gpt-5Western diet-fed mice receiving microbiota transplant from WSD-fed donors (WSD→WSD) (common donor western diet-fed, c57bl/6, sweden, antibiotic, mus musculus, western diet, ampicillin, c57bl/6j, southern gothenburg archipelago, metronidazole, male organism, feces, left colon, vancomycin, specific pathogen-free, microbiota transplant, antimicrobial treatment, neomycin)2026-03-05v41 / 188pendingNo
2303gpt-5Western diet-fed mice receiving microbiota transplant from chow-fed donors (WSD→Chow) (common donor chow-fed, c57bl/6, sweden, antibiotic, mus musculus, western diet, ampicillin, c57bl/6j, southern gothenburg archipelago, metronidazole, male organism, feces, left colon, vancomycin, specific pathogen-free, microbiota transplant, antimicrobial treatment, neomycin)2026-03-05v41 / 195pendingNo
2303gpt-5Western diet vs chow diet in distal colon content ( high in chow diet compared to western diet in c57bl/6 sweden male organism mus musculus c57bl/6j southern gothenburg archipelago feces left colon specific pathogen-free )2026-03-05v41 / 195pendingNo
2303gpt-5Chow-derived microbiota under Western diet vs native chow microbiome ( high in chow diet compared to donor chow-fed antibiotic western diet ampicillin metronidazole vancomycin microbiota transplant antimicrobial treatment neomycin in c57bl/6 sweden male organism mus musculus c57bl/6j southern gothenburg archipelago feces left colon specific pathogen-free )2026-03-05v41 / 228pendingNo
2303gpt-5Chow-fed mouse distal colon content samples (common c57bl/6, sweden, mus musculus, c57bl/6j, southern gothenburg archipelago, male organism, feces, left colon, specific pathogen-free, chow diet)2026-03-05v41 / 296pendingNo

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