Experiment ID: 2300

Field Description
namemicrobial composition predicts genital tract inflammation and persistent bacterial vaginosis in south african adolescent females (5736802) - gpt-5
proj_id5736802
sraprjeb15497
date_of_upload05/03/2026 05:50
doi10.1128/iai.00410-17
modelgpt-5
sample_groups_version18
dbbact_id213
dbbact_linkhttps://dbbact.org/exp_info/213
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
bacterial vaginosis0.666667
young adult stage0.200000
adolescent stage0.142857
vagina0.117647
female organism0.100000
female0.024691
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
bacterial vaginosis0.500000
young adult stage0.111111
adolescent stage0.076923
vagina0.062500
female organism0.052632
female0.012500
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
hiv-negative1.000000
homo sapiens1.000000
bacterial vaginosis1.000000
young adult stage1.000000
female organism1.000000
vagina1.000000
republic of south africa1.000000
female1.000000
adolescent stage1.000000
cape town0.500000
johannesburg0.500000
LOWER IN johannesburg0.166667
LOWER IN cape town0.166667
Number of experiments associating the term to the sequence
TermScore
cape town1.000000
LOWER IN johannesburg1.000000
hiv-negative1.000000
homo sapiens1.000000
bacterial vaginosis1.000000
young adult stage1.000000
female organism1.000000
vagina1.000000
republic of south africa1.000000
female1.000000
adolescent stage1.000000
johannesburg1.000000
LOWER IN cape town1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2300gpt-5Cape Town adolescent vaginal microbiome samples (16S amplicon) (dominant hiv-negative, cape town, homo sapiens, bacterial vaginosis, young adult stage, vagina, republic of south africa, female, female organism, adolescent stage)2026-03-05v41 / 13pendingNo
2300gpt-5Johannesburg adolescent vaginal microbiome samples (16S amplicon) (dominant hiv-negative, homo sapiens, bacterial vaginosis, young adult stage, vagina, republic of south africa, female, female organism, johannesburg, adolescent stage)2026-03-05v41 / 17pendingNo
2300gpt-5Geographic variation in adolescent vaginal microbiome: Cape Town vs Johannesburg (16S amplicon) ( high in johannesburg compared to cape town in hiv-negative homo sapiens bacterial vaginosis young adult stage female organism vagina republic of south africa female adolescent stage )2026-03-05v41 / 50pendingNo
2300gpt-5Cape Town adolescent vaginal microbiome samples (16S amplicon) (common hiv-negative, cape town, homo sapiens, bacterial vaginosis, young adult stage, vagina, republic of south africa, female, female organism, adolescent stage)2026-03-05v41 / 51pendingNo
2300gpt-5Johannesburg adolescent vaginal microbiome samples (16S amplicon) (common hiv-negative, homo sapiens, bacterial vaginosis, young adult stage, vagina, republic of south africa, female, female organism, johannesburg, adolescent stage)2026-03-05v41 / 56pendingNo
2300gpt-5Geographic variation in adolescent vaginal microbiome: Cape Town vs Johannesburg (16S amplicon) ( high in cape town compared to johannesburg in hiv-negative homo sapiens bacterial vaginosis young adult stage female organism vagina republic of south africa female adolescent stage )2026-03-05v41 / 159pendingNo

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