Experiment ID: 2289

Field Description
namelinking spatial structure and community-level biotic interactions through cooccurrence and time series modeling of the human intestinal microbiota (5585691) - gpt-5
proj_id5585691
sraprjna387407
date_of_upload05/03/2026 05:47
doi10.1128/msystems.00086-17
modelgpt-5
sample_groups_version18
dbbact_id194
dbbact_linkhttps://dbbact.org/exp_info/194
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
oslo0.666667
transverse colon0.500000
descending colon0.500000
ascending colon0.400000
sigmoid colon0.333333
LOWER IN transverse colon0.250000
LOWER IN descending colon0.250000
LOWER IN sigmoid colon0.250000
kingdom of norway0.222222
LOWER IN ascending colon0.222222
LOWER IN intestine0.200000
LOWER IN biopsy0.200000
biopsy0.181818
LOWER IN rectum0.153846
rectum0.142857
ileum0.095238
LOWER IN ileum0.095238
intestine0.060606
LOWER IN feces0.055556
human adult stage0.045455
homo sapiens0.005168
feces0.004566
Fraction of dbbact annotations with this term covered by the query
TermScore
oslo0.500000
transverse colon0.500000
descending colon0.500000
LOWER IN transverse colon0.500000
LOWER IN descending colon0.500000
LOWER IN sigmoid colon0.500000
ascending colon0.333333
LOWER IN ascending colon0.333333
sigmoid colon0.250000
LOWER IN intestine0.250000
LOWER IN biopsy0.250000
LOWER IN rectum0.142857
kingdom of norway0.125000
biopsy0.111111
rectum0.083333
LOWER IN ileum0.066667
ileum0.052632
LOWER IN feces0.033333
intestine0.032258
human adult stage0.023256
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
human adult stage1.000000
kingdom of norway1.000000
oslo1.000000
homo sapiens1.000000
intestine0.500000
rectum0.500000
transverse colon0.500000
ascending colon0.500000
descending colon0.500000
sigmoid colon0.500000
ileocecal valve0.500000
spatial sampling0.500000
biopsy0.500000
ileum0.500000
colonoscopy0.500000
time series0.500000
feces0.500000
LOWER IN intestine0.166667
LOWER IN rectum0.166667
LOWER IN transverse colon0.166667
LOWER IN ascending colon0.166667
LOWER IN descending colon0.166667
LOWER IN sigmoid colon0.166667
LOWER IN spatial sampling0.166667
LOWER IN ileocecal valve0.166667
LOWER IN biopsy0.166667
LOWER IN ileum0.166667
LOWER IN colonoscopy0.166667
LOWER IN feces0.166667
LOWER IN time series0.166667
Number of experiments associating the term to the sequence
TermScore
intestine1.000000
human adult stage1.000000
rectum1.000000
kingdom of norway1.000000
oslo1.000000
transverse colon1.000000
ascending colon1.000000
descending colon1.000000
sigmoid colon1.000000
homo sapiens1.000000
ileocecal valve1.000000
spatial sampling1.000000
biopsy1.000000
ileum1.000000
colonoscopy1.000000
time series1.000000
feces1.000000
LOWER IN intestine1.000000
LOWER IN rectum1.000000
LOWER IN transverse colon1.000000
LOWER IN ascending colon1.000000
LOWER IN descending colon1.000000
LOWER IN sigmoid colon1.000000
LOWER IN spatial sampling1.000000
LOWER IN ileocecal valve1.000000
LOWER IN biopsy1.000000
LOWER IN ileum1.000000
LOWER IN colonoscopy1.000000
LOWER IN feces1.000000
LOWER IN time series1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2289gpt-5Human intestinal biopsy samples (spatial sites, 16S amplicon) (dominant intestine, human adult stage, rectum, kingdom of norway, oslo, transverse colon, ascending colon, descending colon, sigmoid colon, homo sapiens, ileocecal valve, spatial sampling, biopsy, ileum, colonoscopy)2026-03-05v41 / 16pendingNo
2289gpt-5Human fecal samples (time series, 16S amplicon) (dominant human adult stage, kingdom of norway, oslo, homo sapiens, time series, feces)2026-03-05v41 / 22pendingNo
2289gpt-5Fecal (luminal) vs intestinal biopsy (mucosal) microbiome in humans (16S) ( high in intestine rectum transverse colon ascending colon descending colon sigmoid colon spatial sampling ileocecal valve biopsy ileum colonoscopy compared to feces time series in oslo human adult stage homo sapiens kingdom of norway )2026-03-05v41 / 193pendingNo
2289gpt-5Fecal (luminal) vs intestinal biopsy (mucosal) microbiome in humans (16S) ( high in feces time series compared to intestine rectum transverse colon ascending colon descending colon sigmoid colon spatial sampling ileocecal valve biopsy ileum colonoscopy in oslo human adult stage homo sapiens kingdom of norway )2026-03-05v41 / 210pendingNo
2289gpt-5Human fecal samples (time series, 16S amplicon) (common human adult stage, kingdom of norway, oslo, homo sapiens, time series, feces)2026-03-05v41 / 237pendingNo
2289gpt-5Human intestinal biopsy samples (spatial sites, 16S amplicon) (common intestine, human adult stage, rectum, kingdom of norway, oslo, transverse colon, ascending colon, descending colon, sigmoid colon, homo sapiens, ileocecal valve, spatial sampling, biopsy, ileum, colonoscopy)2026-03-05v41 / 241pendingNo

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