Experiment ID: 2265

Field Description
namechanges in the gut microbiota of urban subjects during an immersion in the traditional diet and lifestyle of a rainforest village (6115531) - gpt-5
proj_id6115531
sraerp110254
date_of_upload04/03/2026 15:46
doi10.1128/msphere.00193-18
modelgpt-5
sample_groups_version18
dbbact_id371
dbbact_linkhttps://dbbact.org/exp_info/371
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
venezuela0.500000
skin of body0.357143
low fat diet0.357143
village0.333333
nose0.315789
urban biome0.303030
LOWER IN nose0.266667
LOWER IN urban biome0.266667
LOWER IN skin of body0.266667
LOWER IN low fat diet0.210526
LOWER IN diet0.210526
LOWER IN nasal cavity0.210526
LOWER IN oral cavity0.136364
LOWER IN mouth0.127660
nasal cavity0.109091
oral cavity0.079365
diet0.075188
mouth0.066225
LOWER IN feces0.051724
homo sapiens0.005168
feces0.004533
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN nose1.000000
LOWER IN urban biome1.000000
LOWER IN skin of body1.000000
nose0.500000
skin of body0.333333
venezuela0.333333
LOWER IN low fat diet0.333333
LOWER IN diet0.333333
LOWER IN nasal cavity0.333333
low fat diet0.333333
urban biome0.250000
village0.200000
LOWER IN oral cavity0.166667
LOWER IN mouth0.142857
nasal cavity0.071429
oral cavity0.050000
diet0.041667
mouth0.040000
LOWER IN feces0.033333
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
bolívar1.000000
homo sapiens1.000000
kanarakuni1.000000
venezuela1.000000
village1.000000
amerindian community0.846154
traditional lifestyle0.846154
skin of body0.384615
right arm0.384615
right hand0.384615
low fat diet0.384615
diet0.384615
rainforest immersion0.384615
caracas0.384615
visitors0.384615
high-fiber diet0.384615
urban biome0.384615
nose0.230769
nasal cavity0.230769
feces0.192308
mouth0.192308
oral cavity0.192308
LOWER IN low fat diet0.153846
LOWER IN nose0.153846
LOWER IN diet0.153846
LOWER IN rainforest immersion0.153846
LOWER IN nasal cavity0.153846
LOWER IN caracas0.153846
LOWER IN visitors0.153846
LOWER IN high-fiber diet0.153846
LOWER IN urban biome0.153846
LOWER IN skin of body0.153846
LOWER IN right arm0.153846
LOWER IN right hand0.153846
LOWER IN feces0.115385
LOWER IN mouth0.115385
LOWER IN oral cavity0.115385
LOWER IN traditional lifestyle0.076923
LOWER IN amerindian community0.076923
Number of experiments associating the term to the sequence
TermScore
skin of body1.000000
right arm1.000000
right hand1.000000
LOWER IN feces1.000000
bolívar1.000000
amerindian community1.000000
homo sapiens1.000000
kanarakuni1.000000
venezuela1.000000
traditional lifestyle1.000000
village1.000000
LOWER IN mouth1.000000
LOWER IN oral cavity1.000000
LOWER IN low fat diet1.000000
LOWER IN nose1.000000
LOWER IN diet1.000000
LOWER IN rainforest immersion1.000000
LOWER IN nasal cavity1.000000
LOWER IN caracas1.000000
LOWER IN visitors1.000000
LOWER IN high-fiber diet1.000000
LOWER IN urban biome1.000000
feces1.000000
LOWER IN skin of body1.000000
LOWER IN right arm1.000000
LOWER IN right hand1.000000
LOWER IN traditional lifestyle1.000000
LOWER IN amerindian community1.000000
low fat diet1.000000
diet1.000000
rainforest immersion1.000000
caracas1.000000
visitors1.000000
high-fiber diet1.000000
urban biome1.000000
nose1.000000
nasal cavity1.000000
mouth1.000000
oral cavity1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2265gpt-5Villager fecal samples (traditional lifestyle) (dominant feces, bolívar, amerindian community, homo sapiens, kanarakuni, venezuela, traditional lifestyle, village)2026-03-04v41 / 11pendingNo
2265gpt-5Visitor skin samples (urban subjects during rainforest immersion) (dominant low fat diet, bolívar, diet, rainforest immersion, right arm, skin of body, caracas, homo sapiens, kanarakuni, visitors, venezuela, village, high-fiber diet, right hand, urban biome)2026-03-04v41 / 12pendingNo
2265gpt-5Villager nasal samples (traditional lifestyle) + Visitor nasal samples (urban subjects during rainforest immersion) (dominant low fat diet, nose, bolívar, diet, rainforest immersion, nasal cavity, village, amerindian community, caracas, homo sapiens, kanarakuni, venezuela, visitors, traditional lifestyle, high-fiber diet, urban biome)2026-03-04v41 / 13pendingNo
2265gpt-5Villager skin samples (traditional lifestyle) (dominant bolívar, right arm, skin of body, amerindian community, homo sapiens, kanarakuni, venezuela, traditional lifestyle, right hand, village)2026-03-04v41 / 14pendingNo
2265gpt-5Villager oral samples (traditional lifestyle) (dominant bolívar, amerindian community, homo sapiens, mouth, kanarakuni, venezuela, traditional lifestyle, oral cavity, village)2026-03-04v41 / 15pendingNo
2265gpt-5Villager nasal samples (traditional lifestyle) + Visitor nasal samples (urban subjects during rainforest immersion) (common low fat diet, nose, bolívar, diet, rainforest immersion, nasal cavity, village, amerindian community, caracas, homo sapiens, kanarakuni, venezuela, visitors, traditional lifestyle, high-fiber diet, urban biome)2026-03-04v41 / 25pendingNo
2265gpt-5Skin vs nasal microbiome within villagers ( high in low fat diet nose diet rainforest immersion nasal cavity caracas visitors high-fiber diet urban biome compared to skin of body right arm right hand in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 28pendingNo
2265gpt-5Skin vs nasal microbiome within visitors ( high in nasal cavity traditional lifestyle nose amerindian community compared to skin of body right arm right hand in low fat diet bolívar diet rainforest immersion caracas homo sapiens kanarakuni visitors venezuela village high-fiber diet urban biome )2026-03-04v41 / 40pendingNo
2265gpt-5Villager oral samples (traditional lifestyle) (common bolívar, amerindian community, homo sapiens, mouth, kanarakuni, venezuela, traditional lifestyle, oral cavity, village)2026-03-04v41 / 44pendingNo
2265gpt-5Visitor skin samples (urban subjects during rainforest immersion) (common low fat diet, bolívar, diet, rainforest immersion, right arm, skin of body, caracas, homo sapiens, kanarakuni, visitors, venezuela, village, high-fiber diet, right hand, urban biome)2026-03-04v41 / 96pendingNo
2265gpt-5Villager fecal samples (traditional lifestyle) (common feces, bolívar, amerindian community, homo sapiens, kanarakuni, venezuela, traditional lifestyle, village)2026-03-04v41 / 121pendingNo
2265gpt-5Skin vs oral microbiome within villagers ( high in mouth oral cavity compared to skin of body right arm right hand in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 143pendingNo
2265gpt-5Villager skin samples (traditional lifestyle) (common bolívar, right arm, skin of body, amerindian community, homo sapiens, kanarakuni, venezuela, traditional lifestyle, right hand, village)2026-03-04v41 / 199pendingNo
2265gpt-5Skin microbiome: traditional villagers vs urban visitors ( high in low fat diet diet rainforest immersion caracas visitors high-fiber diet urban biome compared to traditional lifestyle amerindian community in bolívar right arm skin of body homo sapiens kanarakuni venezuela right hand village )2026-03-04v41 / 213pendingNo
2265gpt-5Oral vs nasal microbiome within villagers ( high in mouth oral cavity compared to low fat diet nose diet rainforest immersion nasal cavity caracas visitors high-fiber diet urban biome in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 239pendingNo
2265gpt-5Villagers across body sites (within-host-site differences) ( high in mouth oral cavity compared to feces in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 273pendingNo
2265gpt-5Oral vs nasal microbiome within villagers ( high in low fat diet nose diet rainforest immersion nasal cavity caracas visitors high-fiber diet urban biome compared to mouth oral cavity in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 534pendingNo
2265gpt-5Villagers: gut vs nasal microbiome ( high in low fat diet nose diet rainforest immersion nasal cavity caracas visitors high-fiber diet urban biome compared to feces in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 642pendingNo
2265gpt-5Skin vs nasal microbiome within visitors ( high in skin of body right arm right hand compared to nasal cavity traditional lifestyle nose amerindian community in low fat diet bolívar diet rainforest immersion caracas homo sapiens kanarakuni visitors venezuela village high-fiber diet urban biome )2026-03-04v41 / 707pendingNo
2265gpt-5Skin microbiome: traditional villagers vs urban visitors ( high in traditional lifestyle amerindian community compared to low fat diet diet rainforest immersion caracas visitors high-fiber diet urban biome in bolívar right arm skin of body homo sapiens kanarakuni venezuela right hand village )2026-03-04v41 / 919pendingNo
2265gpt-5Villagers: gut vs nasal microbiome ( high in feces compared to low fat diet nose diet rainforest immersion nasal cavity caracas visitors high-fiber diet urban biome in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 967pendingNo
2265gpt-5Villagers across body sites (within-host-site differences) ( high in feces compared to mouth oral cavity in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 980pendingNo
2265gpt-5Villagers: gut vs skin microbiome ( high in feces compared to skin of body right arm right hand in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 993pendingNo
2265gpt-5Skin vs nasal microbiome within villagers ( high in skin of body right arm right hand compared to low fat diet nose diet rainforest immersion nasal cavity caracas visitors high-fiber diet urban biome in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 2354pendingNo
2265gpt-5Skin vs oral microbiome within villagers ( high in skin of body right arm right hand compared to mouth oral cavity in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 2569pendingNo
2265gpt-5Villagers: gut vs skin microbiome ( high in skin of body right arm right hand compared to feces in bolívar amerindian community homo sapiens kanarakuni venezuela traditional lifestyle village )2026-03-04v41 / 2869pendingNo

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