Experiment ID: 2252

Field Description
namethe populus holobiont: dissecting the effects of plant niches and genotype on the microbiome (5810025) - gpt-5
proj_id5810025
sraprjna385484
date_of_upload04/03/2026 15:28
doi10.1186/s40168-018-0413-8
modelgpt-5
sample_groups_version18
dbbact_id462
dbbact_linkhttps://dbbact.org/exp_info/462
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
field0.666667
populus deltoides0.457143
root structure0.387097
na0.366667
loam0.344828
state of tennessee0.333333
depth (soil) 0-30 cm0.256410
LOWER IN populus deltoides0.240000
LOWER IN 0.205128
LOWER IN na0.190476
LOWER IN loam0.190476
bulk soil0.185185
LOWER IN root structure0.173913
LOWER IN depth (soil) 0-30 cm0.160000
LOWER IN bulk soil0.148148
LOWER IN leaf0.121212
leaf0.079470
LOWER IN soil0.075472
LOWER IN rhizosphere0.051282
rhizosphere0.037657
soil0.018904
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN na1.000000
LOWER IN loam1.000000
root structure0.500000
loam0.500000
field0.500000
populus deltoides0.500000
LOWER IN root structure0.500000
LOWER IN populus deltoides0.500000
na0.500000
LOWER IN depth (soil) 0-30 cm0.333333
depth (soil) 0-30 cm0.250000
LOWER IN bulk soil0.250000
LOWER IN 0.200000
state of tennessee0.200000
bulk soil0.142857
LOWER IN leaf0.142857
LOWER IN soil0.058824
LOWER IN rhizosphere0.050000
leaf0.045455
rhizosphere0.019608
soil0.009804
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
blount county1.000000
state of tennessee1.000000
august 20141.000000
field1.000000
genotype0.500000
rhizosphere0.473684
rhizosphere environment0.473684
populus trichocarpa x populus deltoides0.421053
populus deltoides0.421053
shallow depth 0-30 cm0.315789
deep depth 30-75 cm0.315789
root structure0.315789
canopy0.315789
leaf0.315789
phloem0.315789
petiole0.315789
heartwood0.315789
bark0.315789
cambium0.315789
xylem0.315789
na0.289474
emory series0.263158
depth (soil) 0-30 cm0.263158
depth (soil) 30-75 cm0.263158
soil0.263158
b horizon silty clay loam0.263158
loam0.263158
inceptisol0.263158
bulk soil0.263158
LOWER IN 0.210526
LOWER IN populus deltoides0.157895
LOWER IN populus trichocarpa x populus deltoides0.157895
septoria infection0.157895
marssonina brunnea infection0.157895
septoria canker0.157895
LOWER IN genotype0.131579
LOWER IN canopy0.105263
LOWER IN leaf0.105263
LOWER IN phloem0.105263
LOWER IN petiole0.105263
LOWER IN septoria infection0.105263
LOWER IN marssonina brunnea infection0.105263
LOWER IN heartwood0.105263
LOWER IN septoria canker0.105263
LOWER IN bark0.105263
LOWER IN cambium0.105263
LOWER IN xylem0.105263
LOWER IN na0.105263
LOWER IN deep depth 30-75 cm0.105263
LOWER IN root structure0.105263
LOWER IN shallow depth 0-30 cm0.105263
LOWER IN emory series0.105263
LOWER IN depth (soil) 0-30 cm0.105263
LOWER IN depth (soil) 30-75 cm0.105263
LOWER IN soil0.105263
LOWER IN b horizon silty clay loam0.105263
LOWER IN loam0.105263
LOWER IN inceptisol0.105263
LOWER IN bulk soil0.105263
LOWER IN rhizosphere0.052632
LOWER IN rhizosphere environment0.052632
Number of experiments associating the term to the sequence
TermScore
emory series1.000000
shallow depth 0-30 cm1.000000
deep depth 30-75 cm1.000000
depth (soil) 0-30 cm1.000000
depth (soil) 30-75 cm1.000000
rhizosphere1.000000
rhizosphere environment1.000000
soil1.000000
b horizon silty clay loam1.000000
root structure1.000000
loam1.000000
inceptisol1.000000
bulk soil1.000000
LOWER IN canopy1.000000
LOWER IN 1.000000
LOWER IN leaf1.000000
LOWER IN phloem1.000000
LOWER IN petiole1.000000
LOWER IN septoria infection1.000000
LOWER IN marssonina brunnea infection1.000000
LOWER IN heartwood1.000000
LOWER IN septoria canker1.000000
LOWER IN bark1.000000
LOWER IN cambium1.000000
LOWER IN xylem1.000000
LOWER IN na1.000000
united states of america1.000000
blount county1.000000
state of tennessee1.000000
august 20141.000000
field1.000000
populus trichocarpa x populus deltoides1.000000
genotype1.000000
populus deltoides1.000000
LOWER IN deep depth 30-75 cm1.000000
LOWER IN root structure1.000000
LOWER IN populus deltoides1.000000
LOWER IN shallow depth 0-30 cm1.000000
LOWER IN populus trichocarpa x populus deltoides1.000000
LOWER IN genotype1.000000
canopy1.000000
leaf1.000000
phloem1.000000
petiole1.000000
heartwood1.000000
bark1.000000
cambium1.000000
xylem1.000000
na1.000000
LOWER IN emory series1.000000
LOWER IN depth (soil) 0-30 cm1.000000
LOWER IN depth (soil) 30-75 cm1.000000
LOWER IN rhizosphere1.000000
LOWER IN rhizosphere environment1.000000
LOWER IN soil1.000000
LOWER IN b horizon silty clay loam1.000000
LOWER IN loam1.000000
LOWER IN inceptisol1.000000
LOWER IN bulk soil1.000000
septoria infection1.000000
marssonina brunnea infection1.000000
septoria canker1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2252gpt-5Populus deltoides soil-associated bacterial communities (dominant emory series, united states of america, blount county, depth (soil) 0-30 cm, depth (soil) 30-75 cm, rhizosphere, rhizosphere environment, soil, state of tennessee, b horizon silty clay loam, august 2014, inceptisol, field, bulk soil, loam)2026-03-04v41 / 4pendingNo
2252gpt-5Populus trichocarpa × deltoides hybrid soil-associated bacterial communities (dominant emory series, united states of america, blount county, depth (soil) 0-30 cm, depth (soil) 30-75 cm, rhizosphere, rhizosphere environment, soil, state of tennessee, b horizon silty clay loam, august 2014, inceptisol, field, bulk soil, loam, genotype)2026-03-04v41 / 4pendingNo
2252gpt-5Populus deltoides stem-associated bacterial communities (dominant field, united states of america, phloem, blount county, heartwood, state of tennessee, august 2014, bark, populus deltoides, cambium, xylem, na)2026-03-04v41 / 5pendingNo
2252gpt-5Populus deltoides root-associated bacterial communities (dominant field, united states of america, deep depth 30-75 cm, shallow depth 0-30 cm, blount county, rhizosphere, rhizosphere environment, state of tennessee, august 2014, root structure, populus deltoides, )2026-03-04v41 / 6pendingNo
2252gpt-5Populus trichocarpa × deltoides hybrid root-associated bacterial communities (dominant shallow depth 0-30 cm, united states of america, deep depth 30-75 cm, blount county, rhizosphere, rhizosphere environment, state of tennessee, august 2014, root structure, field, populus trichocarpa x populus deltoides, , genotype)2026-03-04v41 / 9pendingNo
2252gpt-5Populus deltoides leaf-associated bacterial communities (dominant canopy, , united states of america, field, leaf, blount county, state of tennessee, august 2014, populus deltoides, petiole)2026-03-04v41 / 11pendingNo
2252gpt-5Populus trichocarpa × deltoides hybrid stem-associated bacterial communities (dominant united states of america, phloem, blount county, heartwood, septoria canker, state of tennessee, august 2014, bark, populus trichocarpa x populus deltoides, field, cambium, xylem, genotype, na)2026-03-04v41 / 13pendingNo
2252gpt-5Populus trichocarpa × deltoides hybrid leaf-associated bacterial communities (dominant canopy, , united states of america, leaf, blount county, septoria infection, marssonina brunnea infection, state of tennessee, august 2014, field, petiole, populus trichocarpa x populus deltoides, genotype)2026-03-04v41 / 21pendingNo
2252gpt-5Populus deltoides stem-associated bacterial communities (common field, united states of america, phloem, blount county, heartwood, state of tennessee, august 2014, bark, populus deltoides, cambium, xylem, )2026-03-04v41 / 30pendingNo
2252gpt-5Populus trichocarpa × deltoides hybrid leaf-associated bacterial communities (common canopy, , united states of america, leaf, blount county, septoria infection, marssonina brunnea infection, state of tennessee, august 2014, field, petiole, populus trichocarpa x populus deltoides, genotype)2026-03-04v41 / 31pendingNo
2252gpt-5Populus deltoides leaf-associated bacterial communities (common canopy, , united states of america, field, leaf, blount county, state of tennessee, august 2014, populus deltoides, petiole)2026-03-04v41 / 38pendingNo
2252gpt-5Populus deltoides root-associated bacterial communities (common field, united states of america, deep depth 30-75 cm, shallow depth 0-30 cm, blount county, rhizosphere, rhizosphere environment, state of tennessee, august 2014, root structure, populus deltoides, )2026-03-04v41 / 40pendingNo
2252gpt-5Host genotype effect on leaf microbiomes (Populus deltoides vs hybrid) ( high in marssonina brunnea infection populus trichocarpa x populus deltoides septoria infection genotype compared to populus deltoides in canopy united states of america leaf blount county state of tennessee august 2014 field petiole )2026-03-04v41 / 50pendingNo
2252gpt-5Populus trichocarpa × deltoides hybrid stem-associated bacterial communities (common united states of america, phloem, blount county, heartwood, septoria canker, state of tennessee, august 2014, bark, populus trichocarpa x populus deltoides, field, cambium, xylem, genotype, na)2026-03-04v41 / 62pendingNo
2252gpt-5Populus trichocarpa × deltoides hybrid root-associated bacterial communities (common shallow depth 0-30 cm, united states of america, deep depth 30-75 cm, blount county, rhizosphere, rhizosphere environment, state of tennessee, august 2014, root structure, field, populus trichocarpa x populus deltoides, , genotype)2026-03-04v41 / 84pendingNo
2252gpt-5Root endosphere vs surrounding soil in Populus deltoides ( high in deep depth 30-75 cm root structure populus deltoides shallow depth 0-30 cm compared to emory series depth (soil) 0-30 cm depth (soil) 30-75 cm soil b horizon silty clay loam inceptisol bulk soil loam in united states of america blount county rhizosphere rhizosphere environment state of tennessee august 2014 field )2026-03-04v41 / 84pendingNo
2252gpt-5Tissue niche partitioning in Populus hybrid: leaf vs stem ( high in canopy leaf septoria infection marssonina brunnea infection petiole compared to phloem heartwood septoria canker bark cambium xylem na in united states of america blount county state of tennessee august 2014 field populus trichocarpa x populus deltoides genotype )2026-03-04v41 / 106pendingNo
2252gpt-5Root endosphere vs surrounding soil in Populus hybrid ( high in deep depth 30-75 cm root structure populus trichocarpa x populus deltoides shallow depth 0-30 cm compared to emory series depth (soil) 0-30 cm depth (soil) 30-75 cm soil b horizon silty clay loam inceptisol bulk soil loam in united states of america blount county rhizosphere rhizosphere environment state of tennessee august 2014 field genotype )2026-03-04v41 / 119pendingNo
2252gpt-5Host genotype effect on root microbiomes (Populus deltoides vs hybrid) ( high in populus deltoides compared to populus trichocarpa x populus deltoides genotype in shallow depth 0-30 cm united states of america deep depth 30-75 cm blount county rhizosphere rhizosphere environment state of tennessee august 2014 root structure field )2026-03-04v41 / 160pendingNo
2252gpt-5Host genotype effect on root microbiomes (Populus deltoides vs hybrid) ( high in populus trichocarpa x populus deltoides genotype compared to populus deltoides in shallow depth 0-30 cm united states of america deep depth 30-75 cm blount county rhizosphere rhizosphere environment state of tennessee august 2014 root structure field )2026-03-04v41 / 162pendingNo
2252gpt-5Host genotype effect on stem microbiomes (Populus deltoides vs hybrid) ( high in populus deltoides compared to septoria canker populus trichocarpa x populus deltoides genotype in united states of america phloem blount county heartwood state of tennessee august 2014 bark field cambium xylem na )2026-03-04v41 / 163pendingNo
2252gpt-5Genotype effect is stronger aboveground? (Combine leaf+stem: deltoides vs hybrid) ( high in septoria infection marssonina brunnea infection septoria canker populus trichocarpa x populus deltoides genotype compared to populus deltoides in canopy united states of america leaf phloem blount county petiole heartwood state of tennessee august 2014 bark field cambium xylem na )2026-03-04v41 / 183pendingNo
2252gpt-5Host genotype effect on stem microbiomes (Populus deltoides vs hybrid) ( high in septoria canker populus trichocarpa x populus deltoides genotype compared to populus deltoides in united states of america phloem blount county heartwood state of tennessee august 2014 bark field cambium xylem na )2026-03-04v41 / 198pendingNo
2252gpt-5Tissue niche partitioning in Populus deltoides: leaf vs stem ( high in phloem heartwood bark cambium xylem na compared to leaf petiole canopy in field united states of america blount county state of tennessee august 2014 populus deltoides )2026-03-04v41 / 250pendingNo
2252gpt-5Tissue niche partitioning in Populus hybrid: leaf vs stem ( high in phloem heartwood septoria canker bark cambium xylem na compared to canopy leaf septoria infection marssonina brunnea infection petiole in united states of america blount county state of tennessee august 2014 field populus trichocarpa x populus deltoides genotype )2026-03-04v41 / 374pendingNo
2252gpt-5Within Populus hybrid: Aboveground (leaf+stem) vs belowground (root+soil) microbiomes ( high in canopy leaf phloem petiole septoria infection marssonina brunnea infection heartwood septoria canker bark cambium xylem na compared to emory series shallow depth 0-30 cm deep depth 30-75 cm depth (soil) 0-30 cm depth (soil) 30-75 cm rhizosphere rhizosphere environment soil b horizon silty clay loam root structure loam inceptisol bulk soil in united states of america blount county state of tennessee august 2014 field populus trichocarpa x populus deltoides genotype )2026-03-04v41 / 441pendingNo
2252gpt-5Host genotype effect on leaf microbiomes (Populus deltoides vs hybrid) ( high in populus deltoides compared to marssonina brunnea infection populus trichocarpa x populus deltoides septoria infection genotype in canopy united states of america leaf blount county state of tennessee august 2014 field petiole )2026-03-04v41 / 541pendingNo
2252gpt-5Tissue niche partitioning in Populus deltoides: leaf vs stem ( high in leaf petiole canopy compared to phloem heartwood bark cambium xylem na in field united states of america blount county state of tennessee august 2014 populus deltoides )2026-03-04v41 / 559pendingNo
2252gpt-5Within Populus deltoides: Aboveground (leaf+stem) vs belowground (root+soil) microbiomes ( high in canopy leaf phloem petiole heartwood bark cambium xylem na compared to emory series shallow depth 0-30 cm deep depth 30-75 cm depth (soil) 0-30 cm depth (soil) 30-75 cm rhizosphere rhizosphere environment soil b horizon silty clay loam root structure loam inceptisol bulk soil in field united states of america blount county state of tennessee august 2014 populus deltoides )2026-03-04v41 / 568pendingNo
2252gpt-5Genotype effect is stronger aboveground? (Combine leaf+stem: deltoides vs hybrid) ( high in populus deltoides compared to septoria infection marssonina brunnea infection septoria canker populus trichocarpa x populus deltoides genotype in canopy united states of america leaf phloem blount county petiole heartwood state of tennessee august 2014 bark field cambium xylem na )2026-03-04v41 / 584pendingNo
2252gpt-5Populus trichocarpa × deltoides hybrid soil-associated bacterial communities (common emory series, united states of america, blount county, depth (soil) 0-30 cm, depth (soil) 30-75 cm, rhizosphere, rhizosphere environment, soil, state of tennessee, b horizon silty clay loam, august 2014, inceptisol, field, bulk soil, loam, genotype)2026-03-04v41 / 729pendingNo
2252gpt-5Populus deltoides soil-associated bacterial communities (common emory series, united states of america, blount county, depth (soil) 0-30 cm, depth (soil) 30-75 cm, rhizosphere, rhizosphere environment, soil, state of tennessee, b horizon silty clay loam, august 2014, inceptisol, field, bulk soil, loam)2026-03-04v41 / 785pendingNo
2252gpt-5Genotype effect belowground (Combine root+soil: deltoides vs hybrid) ( high in populus deltoides compared to populus trichocarpa x populus deltoides genotype in emory series deep depth 30-75 cm depth (soil) 30-75 cm rhizosphere united states of america depth (soil) 0-30 cm soil field shallow depth 0-30 cm loam august 2014 inceptisol blount county rhizosphere environment state of tennessee b horizon silty clay loam root structure bulk soil )2026-03-04v41 / 1201pendingNo
2252gpt-5Genotype effect belowground (Combine root+soil: deltoides vs hybrid) ( high in populus trichocarpa x populus deltoides genotype compared to populus deltoides in emory series deep depth 30-75 cm depth (soil) 30-75 cm rhizosphere united states of america depth (soil) 0-30 cm soil field shallow depth 0-30 cm loam august 2014 inceptisol blount county rhizosphere environment state of tennessee b horizon silty clay loam root structure bulk soil )2026-03-04v41 / 1344pendingNo
2252gpt-5Root endosphere vs surrounding soil in Populus hybrid ( high in emory series depth (soil) 0-30 cm depth (soil) 30-75 cm soil b horizon silty clay loam inceptisol bulk soil loam compared to deep depth 30-75 cm root structure populus trichocarpa x populus deltoides shallow depth 0-30 cm in united states of america blount county rhizosphere rhizosphere environment state of tennessee august 2014 field genotype )2026-03-04v41 / 3395pendingNo
2252gpt-5Root endosphere vs surrounding soil in Populus deltoides ( high in emory series depth (soil) 0-30 cm depth (soil) 30-75 cm soil b horizon silty clay loam inceptisol bulk soil loam compared to deep depth 30-75 cm root structure populus deltoides shallow depth 0-30 cm in united states of america blount county rhizosphere rhizosphere environment state of tennessee august 2014 field )2026-03-04v41 / 3506pendingNo
2252gpt-5Within Populus deltoides: Aboveground (leaf+stem) vs belowground (root+soil) microbiomes ( high in emory series shallow depth 0-30 cm deep depth 30-75 cm depth (soil) 0-30 cm depth (soil) 30-75 cm rhizosphere rhizosphere environment soil b horizon silty clay loam root structure loam inceptisol bulk soil compared to canopy leaf phloem petiole heartwood bark cambium xylem na in field united states of america blount county state of tennessee august 2014 populus deltoides )2026-03-04v41 / 4463pendingNo
2252gpt-5Within Populus hybrid: Aboveground (leaf+stem) vs belowground (root+soil) microbiomes ( high in emory series shallow depth 0-30 cm deep depth 30-75 cm depth (soil) 0-30 cm depth (soil) 30-75 cm rhizosphere rhizosphere environment soil b horizon silty clay loam root structure loam inceptisol bulk soil compared to canopy leaf phloem petiole septoria infection marssonina brunnea infection heartwood septoria canker bark cambium xylem na in united states of america blount county state of tennessee august 2014 field populus trichocarpa x populus deltoides genotype )2026-03-04v41 / 4642pendingNo

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