Experiment ID: 2240

Field Description
namethree distinct pneumotypes characterize the microbiome of the lung in balb/cj mice (5500332) - gpt-5
proj_id5500332
srasrp082977
date_of_upload04/03/2026 15:10
doi10.1371/journal.pone.0180561
modelgpt-5
sample_groups_version18
dbbact_id230
dbbact_linkhttps://dbbact.org/exp_info/230
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
na0.555556
negative control0.555556
upper respiratory tract0.555556
state of maryland0.400000
oropharynx0.232558
LOWER IN na0.222222
LOWER IN negative control0.222222
LOWER IN upper respiratory tract0.222222
LOWER IN mus musculus0.222222
drinking water0.208333
LOWER IN lung0.200000
balb/c0.188679
LOWER IN drinking water0.181818
LOWER IN balb/c0.181818
LOWER IN oropharynx0.166667
lung0.157895
LOWER IN 0.153846
LOWER IN female organism0.117647
female organism0.097087
mus musculus0.026810
control0.008826
LOWER IN control0.008772
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN na1.000000
LOWER IN negative control1.000000
LOWER IN upper respiratory tract1.000000
LOWER IN mus musculus1.000000
na0.500000
negative control0.500000
upper respiratory tract0.500000
LOWER IN lung0.500000
LOWER IN drinking water0.333333
LOWER IN balb/c0.333333
state of maryland0.250000
LOWER IN oropharynx0.250000
LOWER IN 0.200000
oropharynx0.142857
drinking water0.125000
balb/c0.111111
LOWER IN female organism0.111111
lung0.100000
female organism0.052632
mus musculus0.013699
LOWER IN control0.004545
control0.004444
united states of america0.003333
Exp. ID User ID Description Date Region Sequences Status Flag
2240gpt-5Mouse airway and lung microbiota vs environmental cage background ( high in rodent chow autoclaved rodent chow animal-associated environment control drinking water autoclaved bedding na negative control used bedding compared to oropharynx balb/c lung upper lobe of right lung female organism specific pathogen free upper respiratory tract mus musculus lower lobe of right lung in laboratory facility city of frederick animal cage state of maryland united states of america )2026-03-04v41 / 2pendingNo
2240gpt-5Mouse upper respiratory tract (URT) samples (dominant laboratory facility, city of frederick, oropharynx, animal cage, state of maryland, balb/c, united states of america, upper respiratory tract, female organism, mus musculus, specific pathogen free)2026-03-04v41 / 5pendingNo
2240gpt-5Environmental cage samples (bedding and food) + Reagent and water control samples (common laboratory facility, rodent chow, city of frederick, animal cage, state of maryland, autoclaved rodent chow, , animal-associated environment, control, united states of america, drinking water, autoclaved bedding, na, negative control, used bedding)2026-03-04v41 / 6pendingNo
2240gpt-5Mouse lower lung samples + Mouse upper lung samples + Mouse upper respiratory tract (URT) samples + Reagent and water control samples (dominant city of frederick, upper lobe of right lung, oropharynx, animal cage, state of maryland, , lung, united states of america, upper respiratory tract, mus musculus, negative control, laboratory facility, lower lobe of right lung, balb/c, na, control, drinking water, female organism, specific pathogen free)2026-03-04v41 / 7pendingNo
2240gpt-5Mouse airway and lung microbiota vs environmental cage background ( high in oropharynx balb/c lung upper lobe of right lung female organism specific pathogen free upper respiratory tract mus musculus lower lobe of right lung compared to rodent chow autoclaved rodent chow animal-associated environment control drinking water autoclaved bedding na negative control used bedding in laboratory facility city of frederick animal cage state of maryland united states of america )2026-03-04v41 / 7pendingNo
2240gpt-5Mouse upper respiratory tract (URT) samples (common laboratory facility, city of frederick, oropharynx, animal cage, state of maryland, balb/c, united states of america, upper respiratory tract, female organism, mus musculus, specific pathogen free)2026-03-04v41 / 9pendingNo
2240gpt-5Mouse lower lung samples + Mouse upper lung samples + Mouse upper respiratory tract (URT) samples + Reagent and water control samples (common city of frederick, upper lobe of right lung, oropharynx, animal cage, state of maryland, , lung, united states of america, upper respiratory tract, mus musculus, negative control, laboratory facility, lower lobe of right lung, balb/c, na, control, drinking water, female organism, specific pathogen free)2026-03-04v41 / 9pendingNo
2240gpt-5Environmental cage samples (bedding and food) + Reagent and water control samples (dominant laboratory facility, rodent chow, city of frederick, animal cage, state of maryland, autoclaved rodent chow, , animal-associated environment, control, united states of america, drinking water, autoclaved bedding, na, negative control, used bedding)2026-03-04v41 / 13pendingNo

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