Experiment ID: 2240

Field Description
namethree distinct pneumotypes characterize the microbiome of the lung in balb/cj mice (5500332) - gpt-5
proj_id5500332
srasrp082977
date_of_upload04/03/2026 15:10
doi10.1371/journal.pone.0180561
modelgpt-5
sample_groups_version18
dbbact_id230
dbbact_linkhttps://dbbact.org/exp_info/230
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
na0.434783
negative control0.434783
upper respiratory tract0.434783
state of maryland0.250000
LOWER IN na0.222222
LOWER IN negative control0.222222
LOWER IN upper respiratory tract0.222222
LOWER IN mus musculus0.222222
LOWER IN lung0.181818
LOWER IN drinking water0.153846
LOWER IN balb/c0.153846
oropharynx0.136986
LOWER IN oropharynx0.133333
drinking water0.120482
LOWER IN 0.117647
balb/c0.107527
lung0.092308
LOWER IN female organism0.080000
female organism0.051813
mus musculus0.013643
LOWER IN control0.004474
control0.004439
united states of america0.003333
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN na1.000000
LOWER IN negative control1.000000
LOWER IN upper respiratory tract1.000000
LOWER IN mus musculus1.000000
na0.333333
negative control0.333333
upper respiratory tract0.333333
LOWER IN lung0.333333
LOWER IN drinking water0.200000
LOWER IN balb/c0.200000
state of maryland0.142857
LOWER IN oropharynx0.142857
LOWER IN 0.111111
oropharynx0.076923
drinking water0.066667
balb/c0.058824
LOWER IN female organism0.058824
lung0.052632
female organism0.027027
mus musculus0.006897
LOWER IN control0.002278
control0.002227
united states of america0.001669
Exp. ID User ID Description Date Region Sequences Status Flag
2240gpt-5Mouse airway and lung microbiota vs environmental cage background ( high in rodent chow autoclaved rodent chow animal-associated environment control drinking water autoclaved bedding na negative control used bedding compared to oropharynx balb/c lung upper lobe of right lung female organism specific pathogen free upper respiratory tract mus musculus lower lobe of right lung in laboratory facility city of frederick animal cage state of maryland united states of america )2026-03-04v41 / 2pendingNo
2240gpt-5Mouse upper respiratory tract (URT) samples (dominant laboratory facility, city of frederick, oropharynx, animal cage, state of maryland, balb/c, united states of america, upper respiratory tract, female organism, mus musculus, specific pathogen free)2026-03-04v41 / 5pendingNo
2240gpt-5Environmental cage samples (bedding and food) + Reagent and water control samples (common laboratory facility, rodent chow, city of frederick, animal cage, state of maryland, autoclaved rodent chow, , animal-associated environment, control, united states of america, drinking water, autoclaved bedding, na, negative control, used bedding)2026-03-04v41 / 6pendingNo
2240gpt-5Mouse lower lung samples + Mouse upper lung samples + Mouse upper respiratory tract (URT) samples + Reagent and water control samples (dominant city of frederick, upper lobe of right lung, oropharynx, animal cage, state of maryland, , lung, united states of america, upper respiratory tract, mus musculus, negative control, laboratory facility, lower lobe of right lung, balb/c, na, control, drinking water, female organism, specific pathogen free)2026-03-04v41 / 7pendingNo
2240gpt-5Mouse airway and lung microbiota vs environmental cage background ( high in oropharynx balb/c lung upper lobe of right lung female organism specific pathogen free upper respiratory tract mus musculus lower lobe of right lung compared to rodent chow autoclaved rodent chow animal-associated environment control drinking water autoclaved bedding na negative control used bedding in laboratory facility city of frederick animal cage state of maryland united states of america )2026-03-04v41 / 7pendingNo
2240gpt-5Mouse upper respiratory tract (URT) samples (common laboratory facility, city of frederick, oropharynx, animal cage, state of maryland, balb/c, united states of america, upper respiratory tract, female organism, mus musculus, specific pathogen free)2026-03-04v41 / 9pendingNo
2240gpt-5Mouse lower lung samples + Mouse upper lung samples + Mouse upper respiratory tract (URT) samples + Reagent and water control samples (common city of frederick, upper lobe of right lung, oropharynx, animal cage, state of maryland, , lung, united states of america, upper respiratory tract, mus musculus, negative control, laboratory facility, lower lobe of right lung, balb/c, na, control, drinking water, female organism, specific pathogen free)2026-03-04v41 / 9pendingNo
2240gpt-5Environmental cage samples (bedding and food) + Reagent and water control samples (dominant laboratory facility, rodent chow, city of frederick, animal cage, state of maryland, autoclaved rodent chow, , animal-associated environment, control, united states of america, drinking water, autoclaved bedding, na, negative control, used bedding)2026-03-04v41 / 13pendingNo

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