Experiment ID: 2224

Field Description
namemembers of the human gut microbiota involved in recovery from vibrio cholerae infection (4353411) - gpt-5
proj_id4353411
sraprjeb6358
date_of_upload04/03/2026 14:50
doi10.1038/nature13738
modelgpt-5
sample_groups_version18
dbbact_id121
dbbact_linkhttps://dbbact.org/exp_info/121
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
dhaka0.666667
bangladesh0.500000
azithromycin0.416667
LOWER IN hospital0.352941
infant stage0.344828
LOWER IN azithromycin0.300000
LOWER IN child stage0.300000
LOWER IN diarrhea0.272727
LOWER IN human adult stage0.260870
LOWER IN infant stage0.260870
child stage0.227273
diarrhea0.192308
hospital0.173077
human adult stage0.044888
LOWER IN control0.008902
control0.008780
homo sapiens0.005168
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN hospital1.000000
LOWER IN azithromycin0.500000
dhaka0.500000
azithromycin0.500000
LOWER IN child stage0.500000
infant stage0.333333
LOWER IN human adult stage0.333333
bangladesh0.333333
LOWER IN infant stage0.333333
LOWER IN diarrhea0.200000
child stage0.166667
diarrhea0.111111
hospital0.100000
human adult stage0.023256
LOWER IN control0.004545
control0.004444
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
homo sapiens1.000000
bangladesh1.000000
dhaka1.000000
feces1.000000
diarrhea0.714286
human adult stage0.642857
cholera0.642857
patient0.642857
vibrio cholerae infection0.642857
hospital0.642857
LOWER IN diarrhea0.428571
healthy0.357143
mirpur upazila0.357143
child stage0.357143
control0.357143
infant stage0.357143
oral rehydration therapy0.357143
treatment0.357143
azithromycin0.357143
recovery phase0.357143
acute diarrhea0.357143
LOWER IN human adult stage0.214286
LOWER IN cholera0.214286
LOWER IN oral rehydration therapy0.214286
LOWER IN treatment0.214286
LOWER IN azithromycin0.214286
LOWER IN patient0.214286
LOWER IN vibrio cholerae infection0.214286
LOWER IN acute diarrhea0.214286
LOWER IN hospital0.214286
LOWER IN recovery phase0.214286
LOWER IN healthy0.214286
LOWER IN mirpur upazila0.214286
LOWER IN child stage0.214286
LOWER IN control0.214286
LOWER IN infant stage0.214286
Number of experiments associating the term to the sequence
TermScore
healthy1.000000
mirpur upazila1.000000
child stage1.000000
control1.000000
infant stage1.000000
LOWER IN human adult stage1.000000
LOWER IN cholera1.000000
LOWER IN diarrhea1.000000
LOWER IN oral rehydration therapy1.000000
LOWER IN treatment1.000000
LOWER IN azithromycin1.000000
LOWER IN patient1.000000
LOWER IN vibrio cholerae infection1.000000
LOWER IN acute diarrhea1.000000
LOWER IN hospital1.000000
homo sapiens1.000000
bangladesh1.000000
dhaka1.000000
feces1.000000
LOWER IN recovery phase1.000000
human adult stage1.000000
cholera1.000000
diarrhea1.000000
oral rehydration therapy1.000000
treatment1.000000
azithromycin1.000000
patient1.000000
vibrio cholerae infection1.000000
recovery phase1.000000
acute diarrhea1.000000
hospital1.000000
LOWER IN healthy1.000000
LOWER IN mirpur upazila1.000000
LOWER IN child stage1.000000
LOWER IN control1.000000
LOWER IN infant stage1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2224gpt-5Cholera patients: diarrhea-phase human fecal samples (16S) (dominant feces, human adult stage, cholera, diarrhea, homo sapiens, dhaka, oral rehydration therapy, treatment, azithromycin, patient, vibrio cholerae infection, acute diarrhea, hospital, bangladesh, diarrhea)2026-03-04v41 / 8pendingNo
2224gpt-5Cholera patients: diarrhea-phase human fecal samples (16S) (common feces, human adult stage, cholera, diarrhea, homo sapiens, dhaka, oral rehydration therapy, treatment, azithromycin, patient, vibrio cholerae infection, acute diarrhea, hospital, bangladesh, diarrhea)2026-03-04v41 / 17pendingNo
2224gpt-5Cholera patients: recovery-phase human fecal samples (16S) (dominant human adult stage, feces, cholera, homo sapiens, dhaka, recovery phase, patient, vibrio cholerae infection, hospital, bangladesh)2026-03-04v41 / 22pendingNo
2224gpt-5Healthy Bangladeshi children: human fecal samples (16S) (dominant healthy, feces, mirpur upazila, homo sapiens, dhaka, child stage, infant stage, control, bangladesh)2026-03-04v41 / 22pendingNo
2224gpt-5Cholera patients: recovery-phase human fecal samples (16S) (common human adult stage, feces, cholera, homo sapiens, dhaka, recovery phase, patient, vibrio cholerae infection, hospital, bangladesh)2026-03-04v41 / 44pendingNo
2224gpt-5Healthy Bangladeshi children: human fecal samples (16S) (common healthy, feces, mirpur upazila, homo sapiens, dhaka, child stage, infant stage, control, bangladesh)2026-03-04v41 / 78pendingNo
2224gpt-5Cholera diarrhea-phase vs recovery-phase (within-patient disease state effect) ( high in oral rehydration therapy treatment azithromycin acute diarrhea diarrhea diarrhea compared to recovery phase in human adult stage feces cholera homo sapiens dhaka patient vibrio cholerae infection hospital bangladesh )2026-03-04v41 / 481pendingNo
2224gpt-5Cholera diarrhea-phase vs healthy controls (acute infection dysbiosis) ( high in human adult stage cholera diarrhea oral rehydration therapy treatment azithromycin patient vibrio cholerae infection acute diarrhea hospital diarrhea compared to healthy mirpur upazila child stage control infant stage in homo sapiens bangladesh dhaka feces )2026-03-04v41 / 674pendingNo
2224gpt-5Cholera recovery-phase vs healthy controls (residual dysbiosis after infection) ( high in human adult stage cholera recovery phase patient vibrio cholerae infection hospital compared to healthy mirpur upazila child stage control infant stage in homo sapiens bangladesh dhaka feces )2026-03-04v41 / 680pendingNo
2224gpt-5Cholera diarrhea-phase vs recovery-phase (within-patient disease state effect) ( high in recovery phase compared to oral rehydration therapy treatment azithromycin acute diarrhea diarrhea diarrhea in human adult stage feces cholera homo sapiens dhaka patient vibrio cholerae infection hospital bangladesh )2026-03-04v41 / 739pendingNo
2224gpt-5Cholera recovery-phase vs healthy controls (residual dysbiosis after infection) ( high in healthy mirpur upazila child stage control infant stage compared to human adult stage cholera recovery phase patient vibrio cholerae infection hospital in homo sapiens bangladesh dhaka feces )2026-03-04v41 / 763pendingNo
2224gpt-5Any cholera (diarrhea or recovery) vs healthy controls (overall disease-associated shift) ( high in human adult stage cholera diarrhea oral rehydration therapy treatment azithromycin patient vibrio cholerae infection recovery phase acute diarrhea hospital diarrhea compared to healthy mirpur upazila child stage control infant stage in homo sapiens bangladesh dhaka feces )2026-03-04v41 / 902pendingNo
2224gpt-5Any cholera (diarrhea or recovery) vs healthy controls (overall disease-associated shift) ( high in healthy mirpur upazila child stage control infant stage compared to human adult stage cholera diarrhea oral rehydration therapy treatment azithromycin patient vibrio cholerae infection recovery phase acute diarrhea hospital diarrhea in homo sapiens bangladesh dhaka feces )2026-03-04v41 / 1160pendingNo
2224gpt-5Cholera diarrhea-phase vs healthy controls (acute infection dysbiosis) ( high in healthy mirpur upazila child stage control infant stage compared to human adult stage cholera diarrhea oral rehydration therapy treatment azithromycin patient vibrio cholerae infection acute diarrhea hospital diarrhea in homo sapiens bangladesh dhaka feces )2026-03-04v41 / 1198pendingNo

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