Experiment ID: 2218

Field Description
namedefining dysbiosis in patients with urolithiasis (6443657) - gpt-5
proj_id6443657
srasrp140641
date_of_upload01/03/2026 20:47
doi10.1038/s41598-019-41977-6
modelgpt-5
sample_groups_version18
dbbact_id516
dbbact_linkhttps://dbbact.org/exp_info/516
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
nephrolithiasis0.666667
human middle aged stage0.400000
urine0.285714
LOWER IN urine0.250000
LOWER IN feces0.055556
human adult stage0.045455
control0.008850
united states of america0.006645
homo sapiens0.005168
feces0.004566
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN urine0.500000
nephrolithiasis0.500000
human middle aged stage0.250000
urine0.200000
LOWER IN feces0.033333
human adult stage0.023256
control0.004444
united states of america0.003333
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
calcium oxalate kidney stone1.000000
control1.000000
united states of america1.000000
human middle aged stage1.000000
human adult stage1.000000
nephrolithiasis1.000000
city of cleveland1.000000
calcium phosphate kidney stone1.000000
homo sapiens1.000000
uric acid kidney stone1.000000
feces0.500000
urine0.500000
renal system0.500000
LOWER IN urine0.166667
LOWER IN renal system0.166667
LOWER IN feces0.166667
Number of experiments associating the term to the sequence
TermScore
feces1.000000
LOWER IN urine1.000000
LOWER IN renal system1.000000
calcium oxalate kidney stone1.000000
control1.000000
united states of america1.000000
human middle aged stage1.000000
human adult stage1.000000
nephrolithiasis1.000000
city of cleveland1.000000
calcium phosphate kidney stone1.000000
homo sapiens1.000000
uric acid kidney stone1.000000
urine1.000000
renal system1.000000
LOWER IN feces1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2218gpt-5Urolithiasis (USD) human urinary microbiome samples + Healthy human urinary microbiome samples (common calcium oxalate kidney stone, control, human middle aged stage, united states of america, human adult stage, nephrolithiasis, city of cleveland, calcium phosphate kidney stone, renal system, urine, homo sapiens, uric acid kidney stone)2026-03-01v41 / 8pendingNo
2218gpt-5Urolithiasis (USD) human urinary microbiome samples + Healthy human urinary microbiome samples (dominant calcium oxalate kidney stone, control, human middle aged stage, united states of america, human adult stage, nephrolithiasis, city of cleveland, calcium phosphate kidney stone, renal system, urine, homo sapiens, uric acid kidney stone)2026-03-01v41 / 13pendingNo
2218gpt-5Urolithiasis (USD) human gut (stool) microbiome samples + Healthy human gut (stool) microbiome samples (dominant calcium oxalate kidney stone, control, human middle aged stage, united states of america, human adult stage, nephrolithiasis, city of cleveland, feces, calcium phosphate kidney stone, homo sapiens, uric acid kidney stone)2026-03-01v41 / 19pendingNo
2218gpt-5Urolithiasis (USD) human gut (stool) microbiome samples + Healthy human gut (stool) microbiome samples (common calcium oxalate kidney stone, control, human middle aged stage, united states of america, human adult stage, nephrolithiasis, city of cleveland, feces, calcium phosphate kidney stone, homo sapiens, uric acid kidney stone)2026-03-01v41 / 77pendingNo
2218gpt-5Body site specificity in healthy humans: urine vs stool ( high in urine renal system compared to feces in calcium oxalate kidney stone control united states of america human middle aged stage human adult stage nephrolithiasis city of cleveland calcium phosphate kidney stone homo sapiens uric acid kidney stone )2026-03-01v41 / 104pendingNo
2218gpt-5Body site specificity in healthy humans: urine vs stool ( high in feces compared to urine renal system in calcium oxalate kidney stone control united states of america human middle aged stage human adult stage nephrolithiasis city of cleveland calcium phosphate kidney stone homo sapiens uric acid kidney stone )2026-03-01v41 / 750pendingNo

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