Experiment ID: 2208

Field Description
namebifidobacteria or fiber protect against diet-induced microbiota-mediated colonic mucus deterioration (5764785) - gpt-5
proj_id5764785
sraprjeb20367
date_of_upload01/03/2026 19:51
doi10.1016/j.chom.2017.11.004
modelgpt-5
sample_groups_version18
dbbact_id494
dbbact_linkhttps://dbbact.org/exp_info/494
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
antimicrobial treatment0.666667
left colon0.250000
western diet0.238095
vancomycin0.222222
neomycin0.222222
ampicillin0.181818
metronidazole0.153846
LOWER IN western diet0.142857
LOWER IN antimicrobial treatment0.117647
LOWER IN neomycin0.105263
LOWER IN ampicillin0.095238
LOWER IN vancomycin0.086957
c57bl/6j0.083333
LOWER IN metronidazole0.074074
sweden0.062500
male organism0.058824
antibiotic0.048780
c57bl/60.041667
LOWER IN antibiotic0.040816
mus musculus0.013699
feces0.002294
Fraction of dbbact annotations with this term covered by the query
TermScore
antimicrobial treatment1.000000
LOWER IN antimicrobial treatment0.333333
LOWER IN neomycin0.200000
left colon0.142857
LOWER IN western diet0.142857
LOWER IN ampicillin0.142857
western diet0.142857
vancomycin0.142857
neomycin0.142857
LOWER IN vancomycin0.111111
ampicillin0.111111
metronidazole0.090909
LOWER IN metronidazole0.076923
c57bl/6j0.043478
sweden0.032258
male organism0.030303
LOWER IN antibiotic0.028571
antibiotic0.025641
c57bl/60.021277
mus musculus0.006897
feces0.001148
Fraction of annotations for the query sequences containing the term
TermScore
specific pathogen-free1.000000
sweden1.000000
mus musculus1.000000
c57bl/6j1.000000
feces1.000000
southern gothenburg archipelago1.000000
c57bl/61.000000
left colon1.000000
male organism1.000000
western diet0.714286
ampicillin0.500000
vancomycin0.500000
antibiotic0.500000
antimicrobial treatment0.500000
metronidazole0.500000
neomycin0.500000
microbiota transplant0.500000
chow diet0.285714
donor chow-fed0.285714
donor western diet-fed0.214286
LOWER IN western diet0.142857
LOWER IN donor chow-fed0.142857
LOWER IN chow diet0.142857
LOWER IN ampicillin0.071429
LOWER IN vancomycin0.071429
LOWER IN antibiotic0.071429
LOWER IN antimicrobial treatment0.071429
LOWER IN metronidazole0.071429
LOWER IN neomycin0.071429
LOWER IN microbiota transplant0.071429
LOWER IN donor western diet-fed0.071429
Number of experiments associating the term to the sequence
TermScore
specific pathogen-free1.000000
sweden1.000000
mus musculus1.000000
chow diet1.000000
c57bl/6j1.000000
feces1.000000
southern gothenburg archipelago1.000000
c57bl/61.000000
left colon1.000000
male organism1.000000
LOWER IN western diet1.000000
LOWER IN ampicillin1.000000
LOWER IN vancomycin1.000000
LOWER IN antibiotic1.000000
LOWER IN antimicrobial treatment1.000000
LOWER IN metronidazole1.000000
LOWER IN neomycin1.000000
LOWER IN donor chow-fed1.000000
LOWER IN microbiota transplant1.000000
western diet1.000000
ampicillin1.000000
vancomycin1.000000
antibiotic1.000000
antimicrobial treatment1.000000
metronidazole1.000000
neomycin1.000000
donor chow-fed1.000000
microbiota transplant1.000000
donor western diet-fed1.000000
LOWER IN chow diet1.000000
LOWER IN donor western diet-fed1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2208gpt-5Effect of microbiota source under Western diet: Chow-derived vs WSD-derived transplants ( high in donor western diet-fed compared to donor chow-fed in western diet ampicillin vancomycin specific pathogen-free antibiotic antimicrobial treatment sweden metronidazole mus musculus c57bl/6j feces male organism neomycin southern gothenburg archipelago c57bl/6 left colon microbiota transplant )2026-03-01v41 / 6pendingNo
2208gpt-5Chow-fed mouse distal colon content samples (dominant specific pathogen-free, sweden, mus musculus, chow diet, c57bl/6j, feces, southern gothenburg archipelago, c57bl/6, left colon, male organism)2026-03-01v41 / 16pendingNo
2208gpt-5Western diet-fed mouse distal colon content samples (dominant western diet, specific pathogen-free, sweden, mus musculus, c57bl/6j, feces, southern gothenburg archipelago, c57bl/6, left colon, male organism)2026-03-01v41 / 16pendingNo
2208gpt-5Western diet-fed mice receiving microbiota transplant from WSD-fed donors (WSD→WSD) (dominant western diet, ampicillin, vancomycin, specific pathogen-free, antibiotic, antimicrobial treatment, sweden, metronidazole, mus musculus, c57bl/6j, feces, neomycin, donor western diet-fed, southern gothenburg archipelago, c57bl/6, left colon, male organism, microbiota transplant)2026-03-01v41 / 16pendingNo
2208gpt-5Western diet-fed mice receiving microbiota transplant from chow-fed donors (WSD→Chow) (dominant western diet, ampicillin, vancomycin, specific pathogen-free, antibiotic, antimicrobial treatment, sweden, metronidazole, mus musculus, c57bl/6j, feces, neomycin, donor chow-fed, southern gothenburg archipelago, c57bl/6, left colon, male organism, microbiota transplant)2026-03-01v41 / 20pendingNo
2208gpt-5Effect of microbiota source under Western diet: Chow-derived vs WSD-derived transplants ( high in donor chow-fed compared to donor western diet-fed in western diet ampicillin vancomycin specific pathogen-free antibiotic antimicrobial treatment sweden metronidazole mus musculus c57bl/6j feces male organism neomycin southern gothenburg archipelago c57bl/6 left colon microbiota transplant )2026-03-01v41 / 25pendingNo
2208gpt-5Western diet vs chow diet in distal colon content ( high in western diet compared to chow diet in specific pathogen-free sweden mus musculus c57bl/6j feces male organism southern gothenburg archipelago c57bl/6 left colon )2026-03-01v41 / 102pendingNo
2208gpt-5Chow-derived microbiota under Western diet vs native chow microbiome ( high in western diet ampicillin vancomycin antibiotic antimicrobial treatment metronidazole neomycin donor chow-fed microbiota transplant compared to chow diet in specific pathogen-free sweden mus musculus c57bl/6j feces male organism southern gothenburg archipelago c57bl/6 left colon )2026-03-01v41 / 106pendingNo
2208gpt-5Western diet-fed mouse distal colon content samples (common western diet, specific pathogen-free, sweden, mus musculus, c57bl/6j, feces, southern gothenburg archipelago, c57bl/6, left colon, male organism)2026-03-01v41 / 182pendingNo
2208gpt-5Western diet-fed mice receiving microbiota transplant from WSD-fed donors (WSD→WSD) (common western diet, ampicillin, vancomycin, specific pathogen-free, antibiotic, antimicrobial treatment, sweden, metronidazole, mus musculus, c57bl/6j, feces, neomycin, donor western diet-fed, southern gothenburg archipelago, c57bl/6, left colon, male organism, microbiota transplant)2026-03-01v41 / 188pendingNo
2208gpt-5Western diet-fed mice receiving microbiota transplant from chow-fed donors (WSD→Chow) (common western diet, ampicillin, vancomycin, specific pathogen-free, antibiotic, antimicrobial treatment, sweden, metronidazole, mus musculus, c57bl/6j, feces, neomycin, donor chow-fed, southern gothenburg archipelago, c57bl/6, left colon, male organism, microbiota transplant)2026-03-01v41 / 195pendingNo
2208gpt-5Western diet vs chow diet in distal colon content ( high in chow diet compared to western diet in specific pathogen-free sweden mus musculus c57bl/6j feces male organism southern gothenburg archipelago c57bl/6 left colon )2026-03-01v41 / 200pendingNo
2208gpt-5Chow-derived microbiota under Western diet vs native chow microbiome ( high in chow diet compared to western diet ampicillin vancomycin antibiotic antimicrobial treatment metronidazole neomycin donor chow-fed microbiota transplant in specific pathogen-free sweden mus musculus c57bl/6j feces male organism southern gothenburg archipelago c57bl/6 left colon )2026-03-01v41 / 244pendingNo
2208gpt-5Chow-fed mouse distal colon content samples (common specific pathogen-free, sweden, mus musculus, chow diet, c57bl/6j, feces, southern gothenburg archipelago, c57bl/6, left colon, male organism)2026-03-01v41 / 298pendingNo

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