Experiment ID: 220

Field Description
namedietary perturbations alter the ecological significance of ingested lactobacillus plantarum in the digestive tract
sra srp057487
datamd5c7fbcd014736fece699a2a04d38281b2
mapmd5c289b3c68a9b62118ff76fa03e8d5b04

Annotations for experiment:

term enrichment score
TermScore
low fat diet0.260870
lactobacillus plantarum0.181818
LOWER IN lactobacillus plantarum0.181818
LOWER IN low fat diet0.153846
LOWER IN probiotics0.153846
probiotics0.133333
balb/c0.111111
mouse chow0.063158
high fat diet0.063158
LOWER IN high fat diet0.057143
LOWER IN mouse chow0.048780
diet0.041667
mouse0.015152
mus musculus0.013699
female0.012500
research facility0.005236
LOWER IN control0.004474
control0.004376
united states of america0.003333
feces0.002294
Fraction of dbbact annotations with this term covered by the query
TermScore
lactobacillus plantarum0.333333
LOWER IN lactobacillus plantarum0.333333
low fat diet0.200000
LOWER IN low fat diet0.200000
LOWER IN probiotics0.200000
probiotics0.142857
balb/c0.058824
LOWER IN high fat diet0.037037
mouse chow0.034483
high fat diet0.034483
LOWER IN mouse chow0.030303
diet0.021277
mouse0.007634
mus musculus0.006897
female0.006289
research facility0.002625
LOWER IN control0.002278
control0.002227
united states of america0.001669
feces0.001148
Fraction of annotations for the query sequences containing the term
TermScore
mus musculus1.000000
mouse1.000000
feces1.000000
research facility1.000000
united states of america1.000000
female1.000000
balb/c1.000000
diet1.000000
mouse chow0.375000
low fat diet0.375000
high fat diet0.375000
LOWER IN mouse chow0.125000
LOWER IN low fat diet0.125000
LOWER IN high fat diet0.125000
probiotics0.125000
lactobacillus plantarum0.125000
LOWER IN control0.125000
control0.125000
LOWER IN probiotics0.125000
LOWER IN lactobacillus plantarum0.125000
Number of experiments associating the term to the sequence
TermScore
mus musculus1.000000
mouse1.000000
feces1.000000
research facility1.000000
united states of america1.000000
female1.000000
balb/c1.000000
diet1.000000
mouse chow1.000000
low fat diet1.000000
high fat diet1.000000
LOWER IN mouse chow1.000000
LOWER IN low fat diet1.000000
LOWER IN high fat diet1.000000
probiotics1.000000
lactobacillus plantarum1.000000
LOWER IN control1.000000
control1.000000
LOWER IN probiotics1.000000
LOWER IN lactobacillus plantarum1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
220amnonlower in mice supplemented with lactobacillus plantarum probiotics ( high in control diet compared to probiotics lactobacillus plantarum in mus musculus mouse feces research facility united states of america female balb/c )2017-10-24v41 / 7approvedNo
220amnonhigher in mice supplemented with lactobacillus plantarum probiotics ( high in probiotics diet lactobacillus plantarum compared to control in mus musculus mouse feces research facility united states of america female balb/c )2017-10-24v41 / 13approvedNo
220amnondominant mus musculus, mouse, feces, research facility, united states of america, female, balb/c, high fat diet, diet2017-10-24v41 / 14approvedNo
220amnondominant mus musculus, mouse, feces, research facility, united states of america, female, balb/c, diet, mouse chow, low fat diet2017-10-24v41 / 18approvedNo
220amnon high in diet low fat diet mouse chow compared to high fat diet in mus musculus mouse feces research facility united states of america female balb/c 2017-10-24v41 / 113approvedNo
220amnon high in diet high fat diet compared to mouse chow low fat diet in mus musculus mouse feces research facility united states of america female balb/c 2017-10-24v41 / 154approvedNo
220amnoncommon feces, united states of america, female, research facility, mus musculus, balb/c, high fat diet, mouse, diet2017-10-24v41 / 241approvedNo
220amnoncommon mus musculus, mouse, feces, research facility, united states of america, female, balb/c, diet, mouse chow, low fat diet2017-10-24v41 / 262approvedNo

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