Experiment ID: 220

Field Description
namedietary perturbations alter the ecological significance of ingested lactobacillus plantarum in the digestive tract
sra srp057487
datamd5c7fbcd014736fece699a2a04d38281b2
mapmd5c289b3c68a9b62118ff76fa03e8d5b04

Annotations for experiment:

term enrichment score
TermScore
low fat diet0.352941
lactobacillus plantarum0.200000
LOWER IN lactobacillus plantarum0.200000
balb/c0.200000
LOWER IN low fat diet0.181818
LOWER IN probiotics0.181818
probiotics0.166667
mouse chow0.113208
high fat diet0.113208
LOWER IN high fat diet0.090909
diet0.080000
LOWER IN mouse chow0.080000
mouse0.029851
mus musculus0.027027
female0.024691
research facility0.010417
LOWER IN control0.008772
control0.008584
united states of america0.006645
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
lactobacillus plantarum0.500000
LOWER IN lactobacillus plantarum0.500000
low fat diet0.333333
LOWER IN low fat diet0.333333
LOWER IN probiotics0.333333
probiotics0.250000
balb/c0.111111
LOWER IN high fat diet0.071429
mouse chow0.066667
high fat diet0.066667
LOWER IN mouse chow0.058824
diet0.041667
mouse0.015152
mus musculus0.013699
female0.012500
research facility0.005236
LOWER IN control0.004545
control0.004444
united states of america0.003333
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
united states of america1.000000
female1.000000
research facility1.000000
mus musculus1.000000
balb/c1.000000
diet1.000000
mouse1.000000
low fat diet0.375000
mouse chow0.375000
high fat diet0.375000
LOWER IN low fat diet0.125000
LOWER IN mouse chow0.125000
LOWER IN high fat diet0.125000
lactobacillus plantarum0.125000
probiotics0.125000
LOWER IN control0.125000
control0.125000
LOWER IN lactobacillus plantarum0.125000
LOWER IN probiotics0.125000
Number of experiments associating the term to the sequence
TermScore
feces1.000000
united states of america1.000000
female1.000000
research facility1.000000
mus musculus1.000000
balb/c1.000000
diet1.000000
low fat diet1.000000
mouse1.000000
mouse chow1.000000
high fat diet1.000000
LOWER IN low fat diet1.000000
LOWER IN mouse chow1.000000
LOWER IN high fat diet1.000000
lactobacillus plantarum1.000000
probiotics1.000000
LOWER IN control1.000000
control1.000000
LOWER IN lactobacillus plantarum1.000000
LOWER IN probiotics1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
220amnonlower in mice supplemented with lactobacillus plantarum probiotics ( high in control diet compared to lactobacillus plantarum probiotics in feces united states of america female research facility mus musculus balb/c mouse )2017-10-24v41 / 7approvedNo
220amnonhigher in mice supplemented with lactobacillus plantarum probiotics ( high in diet lactobacillus plantarum probiotics compared to control in feces united states of america female research facility mus musculus balb/c mouse )2017-10-24v41 / 13approvedNo
220amnondominant feces, united states of america, female, research facility, mus musculus, balb/c, diet, high fat diet, mouse2017-10-24v41 / 14approvedNo
220amnondominant feces, united states of america, female, research facility, mus musculus, balb/c, diet, low fat diet, mouse, mouse chow2017-10-24v41 / 18approvedNo
220amnon high in diet low fat diet mouse chow compared to high fat diet in feces united states of america female research facility mus musculus balb/c mouse 2017-10-24v41 / 113approvedNo
220amnon high in diet high fat diet compared to low fat diet mouse chow in feces united states of america female research facility mus musculus balb/c mouse 2017-10-24v41 / 154approvedNo
220amnoncommon feces, united states of america, female, research facility, mus musculus, balb/c, diet, high fat diet, mouse2017-10-24v41 / 241approvedNo
220amnoncommon feces, united states of america, female, research facility, mus musculus, balb/c, diet, low fat diet, mouse, mouse chow2017-10-24v41 / 262approvedNo

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