Experiment ID: 2194

Field Description
namedrought stress results in a compartment-specific restructuring of the rice root-associated microbiomes (5516253) - gpt-5
proj_id5516253
sraprjna386367
date_of_upload01/03/2026 19:25
doi10.1128/mbio.00764-17
modelgpt-5
sample_groups_version18
dbbact_id171
dbbact_linkhttps://dbbact.org/exp_info/171
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
rice field0.500000
root interior0.436364
LOWER IN root interior0.324324
root endosphere0.303797
endosphere0.303797
greenhouse0.285714
LOWER IN root endosphere0.279070
LOWER IN endosphere0.279070
LOWER IN 0.246914
oryza sativa0.235955
LOWER IN oryza sativa0.228571
bulk soil0.198020
LOWER IN bulk soil0.170213
LOWER IN rhizosphere0.079470
state of california0.058824
rhizosphere0.037162
water0.035714
soil0.019417
control0.008821
LOWER IN control0.008683
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN root interior1.000000
LOWER IN oryza sativa1.000000
LOWER IN root endosphere0.500000
LOWER IN endosphere0.500000
root interior0.500000
rice field0.333333
root endosphere0.250000
endosphere0.250000
LOWER IN bulk soil0.250000
LOWER IN 0.200000
greenhouse0.166667
oryza sativa0.142857
bulk soil0.142857
LOWER IN rhizosphere0.050000
state of california0.030303
rhizosphere0.019608
water0.018182
soil0.009804
LOWER IN control0.004545
control0.004444
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
biggs soil1.000000
water1.000000
united states of america1.000000
rice field1.000000
davis soil1.000000
state of california1.000000
agricultural soil1.000000
soil1.000000
city of davis1.000000
greenhouse1.000000
oryza glaberrima0.677419
oryza sativa0.677419
drought0.612903
well-watered0.580645
submerged bed0.580645
control0.580645
root interior0.387097
root endosphere0.387097
endosphere0.387097
rhizosphere0.354839
rhizosphere environment0.354839
depth (soil)0.322581
bulk soil0.322581
LOWER IN 0.322581
LOWER IN root endosphere0.193548
LOWER IN root interior0.193548
LOWER IN endosphere0.193548
LOWER IN rhizosphere0.193548
LOWER IN rhizosphere environment0.193548
LOWER IN oryza glaberrima0.129032
LOWER IN oryza sativa0.129032
LOWER IN depth (soil)0.129032
LOWER IN bulk soil0.129032
LOWER IN well-watered0.096774
LOWER IN submerged bed0.096774
LOWER IN control0.096774
LOWER IN drought0.064516
Number of experiments associating the term to the sequence
TermScore
rhizosphere1.000000
rhizosphere environment1.000000
LOWER IN root endosphere1.000000
LOWER IN root interior1.000000
LOWER IN endosphere1.000000
biggs soil1.000000
water1.000000
united states of america1.000000
rice field1.000000
davis soil1.000000
state of california1.000000
agricultural soil1.000000
oryza glaberrima1.000000
soil1.000000
well-watered1.000000
submerged bed1.000000
oryza sativa1.000000
city of davis1.000000
drought1.000000
greenhouse1.000000
control1.000000
depth (soil)1.000000
bulk soil1.000000
LOWER IN 1.000000
LOWER IN oryza glaberrima1.000000
LOWER IN oryza sativa1.000000
LOWER IN rhizosphere1.000000
LOWER IN rhizosphere environment1.000000
LOWER IN well-watered1.000000
LOWER IN submerged bed1.000000
LOWER IN control1.000000
root interior1.000000
root endosphere1.000000
endosphere1.000000
LOWER IN depth (soil)1.000000
LOWER IN bulk soil1.000000
LOWER IN drought1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2194gpt-5Drought-treated rice rhizosphere microbiomes (16S amplicon) (dominant biggs soil, rhizosphere, water, united states of america, , rice field, davis soil, state of california, agricultural soil, oryza glaberrima, soil, rhizosphere environment, , oryza sativa, city of davis, drought, greenhouse)2026-03-01v41 / 1pendingNo
2194gpt-5Drought-treated bulk soil microbiomes (16S amplicon) (dominant biggs soil, water, united states of america, rice field, davis soil, state of california, agricultural soil, soil, city of davis, depth (soil), drought, greenhouse, bulk soil)2026-03-01v41 / 1pendingNo
2194gpt-5Well-watered rice rhizosphere microbiomes (16S amplicon) (dominant biggs soil, water, agricultural soil, rhizosphere environment, oryza sativa, , soil, state of california, oryza glaberrima, well-watered, , city of davis, rhizosphere, rice field, davis soil, greenhouse, submerged bed, united states of america, control)2026-03-01v41 / 2pendingNo
2194gpt-5Drought-treated rice endosphere microbiomes (16S amplicon) (dominant root interior, biggs soil, water, root endosphere, , united states of america, rice field, davis soil, state of california, agricultural soil, oryza glaberrima, soil, endosphere, oryza sativa, city of davis, drought, greenhouse)2026-03-01v41 / 3pendingNo
2194gpt-5Well-watered bulk soil microbiomes (16S amplicon) (dominant biggs soil, water, united states of america, rice field, davis soil, state of california, agricultural soil, soil, well-watered, submerged bed, control, city of davis, depth (soil), greenhouse, bulk soil)2026-03-01v41 / 3pendingNo
2194gpt-5Well-watered rice endosphere microbiomes (16S amplicon) (dominant biggs soil, water, agricultural soil, oryza sativa, root interior, root endosphere, , soil, state of california, oryza glaberrima, well-watered, endosphere, city of davis, rice field, davis soil, greenhouse, submerged bed, united states of america, control)2026-03-01v41 / 10pendingNo
2194gpt-5Effect of drought on bulk soil microbiomes (16S amplicon) ( high in drought compared to well-watered submerged bed control in biggs soil water rice field davis soil state of california agricultural soil soil greenhouse city of davis depth (soil) united states of america bulk soil )2026-03-01v41 / 22pendingNo
2194gpt-5Root-associated vs bulk soil under well-watered conditions ( high in root interior rhizosphere root endosphere oryza glaberrima endosphere rhizosphere environment oryza sativa compared to depth (soil) bulk soil in biggs soil water united states of america rice field davis soil state of california agricultural soil soil well-watered submerged bed city of davis greenhouse control )2026-03-01v41 / 51pendingNo
2194gpt-5Effect of drought on bulk soil microbiomes (16S amplicon) ( high in well-watered submerged bed control compared to drought in biggs soil water rice field davis soil state of california agricultural soil soil greenhouse city of davis depth (soil) united states of america bulk soil )2026-03-01v41 / 59pendingNo
2194gpt-5Compartment differences under drought: rhizosphere vs endosphere ( high in root endosphere root interior endosphere compared to rhizosphere rhizosphere environment in biggs soil water united states of america rice field davis soil state of california agricultural soil oryza glaberrima soil oryza sativa city of davis drought greenhouse )2026-03-01v41 / 67pendingNo
2194gpt-5Rhizosphere vs bulk soil under matched watering regime (differential recruitment to roots) ( high in depth (soil) bulk soil compared to rhizosphere oryza glaberrima rhizosphere environment oryza sativa in biggs soil water united states of america rice field davis soil state of california agricultural soil soil well-watered submerged bed city of davis drought greenhouse control )2026-03-01v41 / 69pendingNo
2194gpt-5Drought-treated rice endosphere microbiomes (16S amplicon) (common root interior, biggs soil, water, root endosphere, , united states of america, rice field, davis soil, state of california, agricultural soil, oryza glaberrima, soil, endosphere, oryza sativa, city of davis, drought, greenhouse)2026-03-01v41 / 94pendingNo
2194gpt-5Well-watered rice endosphere microbiomes (16S amplicon) (common biggs soil, water, agricultural soil, oryza sativa, root interior, root endosphere, , soil, state of california, oryza glaberrima, well-watered, endosphere, city of davis, rice field, davis soil, greenhouse, submerged bed, united states of america, control)2026-03-01v41 / 94pendingNo
2194gpt-5Root-associated vs bulk soil under drought ( high in root interior rhizosphere root endosphere oryza glaberrima endosphere rhizosphere environment oryza sativa compared to depth (soil) bulk soil in biggs soil water rice field davis soil state of california agricultural soil soil greenhouse city of davis drought united states of america )2026-03-01v41 / 112pendingNo
2194gpt-5Rhizosphere vs bulk soil under matched watering regime (differential recruitment to roots) ( high in rhizosphere oryza glaberrima rhizosphere environment oryza sativa compared to depth (soil) bulk soil in biggs soil water united states of america rice field davis soil state of california agricultural soil soil well-watered submerged bed city of davis drought greenhouse control )2026-03-01v41 / 116pendingNo
2194gpt-5Compartment differences under well-watered conditions: rhizosphere vs endosphere ( high in root endosphere root interior endosphere compared to rhizosphere rhizosphere environment in biggs soil water united states of america rice field davis soil state of california agricultural soil oryza glaberrima soil well-watered submerged bed oryza sativa city of davis greenhouse control )2026-03-01v41 / 157pendingNo
2194gpt-5Drought response differs by root compartment (interaction test): rhizosphere vs endosphere ( high in root endosphere root interior endosphere compared to rhizosphere rhizosphere environment in biggs soil water united states of america rice field davis soil state of california agricultural soil oryza glaberrima soil well-watered submerged bed oryza sativa city of davis drought greenhouse control )2026-03-01v41 / 166pendingNo
2194gpt-5Effect of drought on rice endosphere microbiomes (16S amplicon) ( high in well-watered submerged bed control compared to drought in root interior biggs soil water root endosphere united states of america rice field davis soil state of california agricultural soil oryza glaberrima soil endosphere oryza sativa city of davis greenhouse )2026-03-01v41 / 287pendingNo
2194gpt-5Effect of drought on rice endosphere microbiomes (16S amplicon) ( high in drought compared to well-watered submerged bed control in root interior biggs soil water root endosphere united states of america rice field davis soil state of california agricultural soil oryza glaberrima soil endosphere oryza sativa city of davis greenhouse )2026-03-01v41 / 320pendingNo
2194gpt-5Endosphere vs bulk soil under matched watering regime (host filtering strength) ( high in root interior root endosphere oryza glaberrima endosphere oryza sativa compared to depth (soil) bulk soil in biggs soil water united states of america rice field davis soil state of california agricultural soil soil well-watered submerged bed city of davis drought greenhouse control )2026-03-01v41 / 389pendingNo
2194gpt-5Drought-treated rice rhizosphere microbiomes (16S amplicon) (common biggs soil, rhizosphere, water, united states of america, , rice field, davis soil, state of california, agricultural soil, oryza glaberrima, soil, rhizosphere environment, , oryza sativa, city of davis, drought, greenhouse)2026-03-01v41 / 485pendingNo
2194gpt-5Well-watered rice rhizosphere microbiomes (16S amplicon) (common biggs soil, water, agricultural soil, rhizosphere environment, oryza sativa, , soil, state of california, oryza glaberrima, well-watered, , city of davis, rhizosphere, rice field, davis soil, greenhouse, submerged bed, united states of america, control)2026-03-01v41 / 546pendingNo
2194gpt-5Drought-treated bulk soil microbiomes (16S amplicon) (common biggs soil, water, united states of america, rice field, davis soil, state of california, agricultural soil, soil, city of davis, depth (soil), drought, greenhouse, bulk soil)2026-03-01v41 / 617pendingNo
2194gpt-5Root-associated vs bulk soil under well-watered conditions ( high in depth (soil) bulk soil compared to root interior rhizosphere root endosphere oryza glaberrima endosphere rhizosphere environment oryza sativa in biggs soil water united states of america rice field davis soil state of california agricultural soil soil well-watered submerged bed city of davis greenhouse control )2026-03-01v41 / 645pendingNo
2194gpt-5Well-watered bulk soil microbiomes (16S amplicon) (common biggs soil, water, united states of america, rice field, davis soil, state of california, agricultural soil, soil, well-watered, submerged bed, control, city of davis, depth (soil), greenhouse, bulk soil)2026-03-01v41 / 692pendingNo
2194gpt-5Effect of drought on rice rhizosphere microbiomes (16S amplicon) ( high in drought compared to well-watered submerged bed control in biggs soil rhizosphere water united states of america rice field davis soil state of california agricultural soil oryza glaberrima soil rhizosphere environment oryza sativa city of davis greenhouse )2026-03-01v41 / 831pendingNo
2194gpt-5Root-associated vs bulk soil under drought ( high in depth (soil) bulk soil compared to root interior rhizosphere root endosphere oryza glaberrima endosphere rhizosphere environment oryza sativa in biggs soil water rice field davis soil state of california agricultural soil soil greenhouse city of davis drought united states of america )2026-03-01v41 / 1794pendingNo
2194gpt-5Compartment differences under drought: rhizosphere vs endosphere ( high in rhizosphere rhizosphere environment compared to root endosphere root interior endosphere in biggs soil water united states of america rice field davis soil state of california agricultural soil oryza glaberrima soil oryza sativa city of davis drought greenhouse )2026-03-01v41 / 6378pendingNo
2194gpt-5Compartment differences under well-watered conditions: rhizosphere vs endosphere ( high in rhizosphere rhizosphere environment compared to root endosphere root interior endosphere in biggs soil water united states of america rice field davis soil state of california agricultural soil oryza glaberrima soil well-watered submerged bed oryza sativa city of davis greenhouse control )2026-03-01v41 / 6993pendingNo
2194gpt-5Endosphere vs bulk soil under matched watering regime (host filtering strength) ( high in depth (soil) bulk soil compared to root interior root endosphere oryza glaberrima endosphere oryza sativa in biggs soil water united states of america rice field davis soil state of california agricultural soil soil well-watered submerged bed city of davis drought greenhouse control )2026-03-01v41 / 8969pendingNo
2194gpt-5Drought response differs by root compartment (interaction test): rhizosphere vs endosphere ( high in rhizosphere rhizosphere environment compared to root endosphere root interior endosphere in biggs soil water united states of america rice field davis soil state of california agricultural soil oryza glaberrima soil well-watered submerged bed oryza sativa city of davis drought greenhouse control )2026-03-01v41 / 10784pendingNo

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