Experiment ID: 2192

Field Description
namedrought stress results in a compartment-specific restructuring of the rice root-associated microbiomes (5516253) - gpt-5
proj_id5516253
sraprjna386367
date_of_upload01/03/2026 19:21
doi10.1128/mbio.00764-17
modelgpt-5
sample_groups_version18
dbbact_id171
dbbact_linkhttps://dbbact.org/exp_info/171
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
rice field0.500000
root interior0.428571
LOWER IN root interior0.315789
root endosphere0.300000
endosphere0.300000
greenhouse0.285714
LOWER IN endosphere0.272727
LOWER IN root endosphere0.272727
LOWER IN 0.243902
oryza sativa0.236559
LOWER IN oryza sativa0.222222
bulk soil0.196078
LOWER IN bulk soil0.166667
LOWER IN rhizosphere0.078947
state of california0.058824
rhizosphere0.037267
water0.035714
soil0.019417
control0.008823
LOWER IN control0.008671
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN root interior1.000000
LOWER IN oryza sativa1.000000
LOWER IN endosphere0.500000
LOWER IN root endosphere0.500000
root interior0.500000
rice field0.333333
root endosphere0.250000
endosphere0.250000
LOWER IN bulk soil0.250000
LOWER IN 0.200000
greenhouse0.166667
oryza sativa0.142857
bulk soil0.142857
LOWER IN rhizosphere0.050000
state of california0.030303
rhizosphere0.019608
water0.018182
soil0.009804
LOWER IN control0.004545
control0.004444
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
water1.000000
greenhouse1.000000
united states of america1.000000
state of california1.000000
agricultural soil1.000000
biggs soil1.000000
city of davis1.000000
rice field1.000000
davis soil1.000000
soil1.000000
oryza glaberrima0.687500
oryza sativa0.687500
drought0.593750
well-watered0.593750
submerged bed0.593750
control0.593750
rhizosphere environment0.375000
rhizosphere0.375000
root endosphere0.375000
root interior0.375000
endosphere0.375000
depth (soil)0.312500
bulk soil0.312500
LOWER IN 0.312500
LOWER IN root interior0.187500
LOWER IN endosphere0.187500
LOWER IN root endosphere0.187500
LOWER IN rhizosphere0.187500
LOWER IN rhizosphere environment0.187500
LOWER IN oryza glaberrima0.125000
LOWER IN oryza sativa0.125000
LOWER IN depth (soil)0.125000
LOWER IN bulk soil0.125000
LOWER IN drought0.093750
LOWER IN submerged bed0.093750
LOWER IN control0.093750
LOWER IN well-watered0.093750
Number of experiments associating the term to the sequence
TermScore
rhizosphere environment1.000000
rhizosphere1.000000
LOWER IN root interior1.000000
LOWER IN endosphere1.000000
LOWER IN root endosphere1.000000
water1.000000
greenhouse1.000000
drought1.000000
well-watered1.000000
united states of america1.000000
state of california1.000000
agricultural soil1.000000
biggs soil1.000000
city of davis1.000000
oryza glaberrima1.000000
submerged bed1.000000
rice field1.000000
davis soil1.000000
oryza sativa1.000000
control1.000000
soil1.000000
depth (soil)1.000000
bulk soil1.000000
LOWER IN 1.000000
LOWER IN oryza glaberrima1.000000
LOWER IN oryza sativa1.000000
LOWER IN rhizosphere1.000000
LOWER IN rhizosphere environment1.000000
LOWER IN drought1.000000
LOWER IN submerged bed1.000000
LOWER IN control1.000000
LOWER IN well-watered1.000000
root endosphere1.000000
root interior1.000000
endosphere1.000000
LOWER IN depth (soil)1.000000
LOWER IN bulk soil1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2192gpt-5Drought-treated rice rhizosphere microbiomes (16S amplicon) (dominant water, greenhouse, drought, , united states of america, state of california, , rhizosphere, agricultural soil, biggs soil, city of davis, oryza glaberrima, rice field, davis soil, oryza sativa, rhizosphere environment, soil)2026-03-01v41 / 1pendingNo
2192gpt-5Drought-treated bulk soil microbiomes (16S amplicon) (dominant water, depth (soil), bulk soil, greenhouse, drought, united states of america, state of california, agricultural soil, biggs soil, city of davis, rice field, davis soil, soil)2026-03-01v41 / 1pendingNo
2192gpt-5Well-watered rice rhizosphere microbiomes (16S amplicon) (dominant greenhouse, united states of america, , rhizosphere, biggs soil, city of davis, control, soil, , state of california, davis soil, water, well-watered, agricultural soil, oryza glaberrima, rice field, submerged bed, oryza sativa, rhizosphere environment)2026-03-01v41 / 2pendingNo
2192gpt-5Drought-treated rice endosphere microbiomes (16S amplicon) (dominant water, greenhouse, drought, united states of america, state of california, , root endosphere, agricultural soil, biggs soil, city of davis, root interior, oryza glaberrima, rice field, davis soil, oryza sativa, endosphere, soil)2026-03-01v41 / 3pendingNo
2192gpt-5Well-watered bulk soil microbiomes (16S amplicon) (dominant water, depth (soil), greenhouse, bulk soil, well-watered, united states of america, state of california, agricultural soil, biggs soil, city of davis, submerged bed, rice field, davis soil, control, soil)2026-03-01v41 / 3pendingNo
2192gpt-5Well-watered rice endosphere microbiomes (16S amplicon) (dominant greenhouse, united states of america, , biggs soil, city of davis, endosphere, control, soil, state of california, davis soil, water, well-watered, agricultural soil, oryza glaberrima, rice field, root endosphere, root interior, submerged bed, oryza sativa)2026-03-01v41 / 10pendingNo
2192gpt-5Effect of drought on bulk soil microbiomes (16S amplicon) ( high in drought compared to submerged bed control well-watered in water depth (soil) greenhouse bulk soil united states of america state of california agricultural soil biggs soil city of davis rice field davis soil soil )2026-03-01v41 / 22pendingNo
2192gpt-5Root-associated vs bulk soil under well-watered conditions ( high in rhizosphere root endosphere root interior oryza glaberrima oryza sativa rhizosphere environment endosphere compared to depth (soil) bulk soil in water greenhouse well-watered united states of america state of california agricultural soil biggs soil city of davis submerged bed rice field davis soil control soil )2026-03-01v41 / 51pendingNo
2192gpt-5Effect of drought on bulk soil microbiomes (16S amplicon) ( high in submerged bed control well-watered compared to drought in water depth (soil) greenhouse bulk soil united states of america state of california agricultural soil biggs soil city of davis rice field davis soil soil )2026-03-01v41 / 59pendingNo
2192gpt-5Compartment differences under drought: rhizosphere vs endosphere ( high in root interior endosphere root endosphere compared to rhizosphere environment rhizosphere in water greenhouse drought united states of america state of california agricultural soil biggs soil city of davis oryza glaberrima rice field davis soil oryza sativa soil )2026-03-01v41 / 67pendingNo
2192gpt-5Rhizosphere vs bulk soil under matched watering regime (differential recruitment to roots) ( high in depth (soil) bulk soil compared to rhizosphere oryza glaberrima oryza sativa rhizosphere environment in water greenhouse drought well-watered united states of america state of california agricultural soil biggs soil city of davis submerged bed rice field davis soil control soil )2026-03-01v41 / 69pendingNo
2192gpt-5Drought-treated rice endosphere microbiomes (16S amplicon) (common water, greenhouse, drought, united states of america, state of california, , root endosphere, agricultural soil, biggs soil, city of davis, root interior, oryza glaberrima, rice field, davis soil, oryza sativa, endosphere, soil)2026-03-01v41 / 94pendingNo
2192gpt-5Well-watered rice endosphere microbiomes (16S amplicon) (common greenhouse, united states of america, , biggs soil, city of davis, endosphere, control, soil, state of california, davis soil, water, well-watered, agricultural soil, oryza glaberrima, rice field, root endosphere, root interior, submerged bed, oryza sativa)2026-03-01v41 / 94pendingNo
2192gpt-5Root-associated vs bulk soil under drought ( high in rhizosphere root endosphere root interior oryza glaberrima oryza sativa rhizosphere environment endosphere compared to depth (soil) bulk soil in water greenhouse drought united states of america state of california agricultural soil biggs soil city of davis rice field davis soil soil )2026-03-01v41 / 112pendingNo
2192gpt-5Rhizosphere vs bulk soil under matched watering regime (differential recruitment to roots) ( high in rhizosphere oryza glaberrima oryza sativa rhizosphere environment compared to depth (soil) bulk soil in water greenhouse drought well-watered united states of america state of california agricultural soil biggs soil city of davis submerged bed rice field davis soil control soil )2026-03-01v41 / 116pendingNo
2192gpt-5Compartment differences under well-watered conditions: rhizosphere vs endosphere ( high in root interior endosphere root endosphere compared to rhizosphere environment rhizosphere in water greenhouse well-watered united states of america state of california agricultural soil biggs soil city of davis oryza glaberrima submerged bed rice field davis soil oryza sativa control soil )2026-03-01v41 / 157pendingNo
2192gpt-5Drought response differs by root compartment (interaction test): rhizosphere vs endosphere ( high in root interior endosphere root endosphere compared to rhizosphere environment rhizosphere in water greenhouse drought well-watered united states of america state of california agricultural soil biggs soil city of davis oryza glaberrima submerged bed rice field davis soil oryza sativa control soil )2026-03-01v41 / 166pendingNo
2192gpt-5Effect of drought on rice endosphere microbiomes (16S amplicon) ( high in submerged bed control well-watered compared to drought in water greenhouse united states of america state of california root endosphere agricultural soil biggs soil city of davis root interior oryza glaberrima rice field davis soil oryza sativa endosphere soil )2026-03-01v41 / 287pendingNo
2192gpt-5Effect of drought on rice endosphere microbiomes (16S amplicon) ( high in drought compared to submerged bed control well-watered in water greenhouse united states of america state of california root endosphere agricultural soil biggs soil city of davis root interior oryza glaberrima rice field davis soil oryza sativa endosphere soil )2026-03-01v41 / 320pendingNo
2192gpt-5Endosphere vs bulk soil under matched watering regime (host filtering strength) ( high in root endosphere root interior oryza glaberrima oryza sativa endosphere compared to depth (soil) bulk soil in water greenhouse drought well-watered united states of america state of california agricultural soil biggs soil city of davis submerged bed rice field davis soil control soil )2026-03-01v41 / 389pendingNo
2192gpt-5Drought-treated rice rhizosphere microbiomes (16S amplicon) (common water, greenhouse, drought, , united states of america, state of california, , rhizosphere, agricultural soil, biggs soil, city of davis, oryza glaberrima, rice field, davis soil, oryza sativa, rhizosphere environment, soil)2026-03-01v41 / 485pendingNo
2192gpt-5Well-watered rice rhizosphere microbiomes (16S amplicon) (common greenhouse, united states of america, , rhizosphere, biggs soil, city of davis, control, soil, , state of california, davis soil, water, well-watered, agricultural soil, oryza glaberrima, rice field, submerged bed, oryza sativa, rhizosphere environment)2026-03-01v41 / 546pendingNo
2192gpt-5Drought-treated bulk soil microbiomes (16S amplicon) (common water, depth (soil), bulk soil, greenhouse, drought, united states of america, state of california, agricultural soil, biggs soil, city of davis, rice field, davis soil, soil)2026-03-01v41 / 617pendingNo
2192gpt-5Root-associated vs bulk soil under well-watered conditions ( high in depth (soil) bulk soil compared to rhizosphere root endosphere root interior oryza glaberrima oryza sativa rhizosphere environment endosphere in water greenhouse well-watered united states of america state of california agricultural soil biggs soil city of davis submerged bed rice field davis soil control soil )2026-03-01v41 / 645pendingNo
2192gpt-5Well-watered bulk soil microbiomes (16S amplicon) (common water, depth (soil), greenhouse, bulk soil, well-watered, united states of america, state of california, agricultural soil, biggs soil, city of davis, submerged bed, rice field, davis soil, control, soil)2026-03-01v41 / 692pendingNo
2192gpt-5Effect of drought on rice rhizosphere microbiomes (16S amplicon) ( high in drought compared to submerged bed control well-watered in water greenhouse united states of america state of california rhizosphere agricultural soil biggs soil city of davis oryza glaberrima rice field davis soil oryza sativa rhizosphere environment soil )2026-03-01v41 / 831pendingNo
2192gpt-5Effect of drought on rice rhizosphere microbiomes (16S amplicon) ( high in submerged bed control well-watered compared to drought in water greenhouse united states of america state of california rhizosphere agricultural soil biggs soil city of davis oryza glaberrima rice field davis soil oryza sativa rhizosphere environment soil )2026-03-01v41 / 1298pendingNo
2192gpt-5Root-associated vs bulk soil under drought ( high in depth (soil) bulk soil compared to rhizosphere root endosphere root interior oryza glaberrima oryza sativa rhizosphere environment endosphere in water greenhouse drought united states of america state of california agricultural soil biggs soil city of davis rice field davis soil soil )2026-03-01v41 / 1794pendingNo
2192gpt-5Compartment differences under drought: rhizosphere vs endosphere ( high in rhizosphere environment rhizosphere compared to root interior endosphere root endosphere in water greenhouse drought united states of america state of california agricultural soil biggs soil city of davis oryza glaberrima rice field davis soil oryza sativa soil )2026-03-01v41 / 6378pendingNo
2192gpt-5Compartment differences under well-watered conditions: rhizosphere vs endosphere ( high in rhizosphere environment rhizosphere compared to root interior endosphere root endosphere in water greenhouse well-watered united states of america state of california agricultural soil biggs soil city of davis oryza glaberrima submerged bed rice field davis soil oryza sativa control soil )2026-03-01v41 / 6993pendingNo
2192gpt-5Endosphere vs bulk soil under matched watering regime (host filtering strength) ( high in depth (soil) bulk soil compared to root endosphere root interior oryza glaberrima oryza sativa endosphere in water greenhouse drought well-watered united states of america state of california agricultural soil biggs soil city of davis submerged bed rice field davis soil control soil )2026-03-01v41 / 8969pendingNo
2192gpt-5Drought response differs by root compartment (interaction test): rhizosphere vs endosphere ( high in rhizosphere environment rhizosphere compared to root interior endosphere root endosphere in water greenhouse drought well-watered united states of america state of california agricultural soil biggs soil city of davis oryza glaberrima submerged bed rice field davis soil oryza sativa control soil )2026-03-01v41 / 10784pendingNo

Problems / suggestions? Please visit the dbBact forum