Experiment ID: 2175

Field Description
nameunearthing microbial diversity of taxus rhizosphere via miseq high-throughput amplicon sequencing and isolate characterization (4832182) - gpt-5
proj_id4832182
srasrp051525
date_of_upload01/03/2026 18:45
doi10.1038/srep22006
modelgpt-5
sample_groups_version18
dbbact_id134
dbbact_linkhttps://dbbact.org/exp_info/134
needs_manual_reviewtrue

Annotations for experiment:

Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN nanjing city prefecture1.000000
field0.500000
taxus media0.500000
temperate0.500000
taxus cuspidata0.500000
taxus mairei0.500000
botanical garden0.500000
LOWER IN taxus mairei0.500000
LOWER IN botanical garden0.500000
LOWER IN taxus media0.500000
LOWER IN temperate0.500000
LOWER IN dalian city prefecture0.500000
LOWER IN taxus cuspidata0.500000
dalian city prefecture0.333333
subtropical0.333333
LOWER IN subtropical0.333333
nanjing city prefecture0.250000
plant0.125000
rhizosphere0.019608
china0.004717
Fraction of annotations for the query sequences containing the term
TermScore
field1.000000
rhizosphere microbiome1.000000
plant1.000000
china1.000000
rhizosphere1.000000
altitude 50 m0.666667
university campus0.666667
temperate0.666667
dalian city prefecture0.666667
taxus media0.333333
taxus cuspidata0.333333
subtropical0.333333
taxus mairei0.333333
nanjing city prefecture0.333333
altitude 200 m0.333333
botanical garden0.333333
LOWER IN subtropical0.166667
LOWER IN taxus mairei0.166667
LOWER IN nanjing city prefecture0.166667
LOWER IN altitude 200 m0.166667
LOWER IN botanical garden0.166667
LOWER IN altitude 50 m0.166667
LOWER IN university campus0.166667
LOWER IN taxus media0.166667
LOWER IN temperate0.166667
LOWER IN dalian city prefecture0.166667
LOWER IN taxus cuspidata0.166667
Exp. ID User ID Description Date Region Sequences Status Flag
2175gpt-5T. cuspidata var. nana rhizosphere bacterial (16S) samples (dominant altitude 50 m, taxus cuspidata, university campus, field, rhizosphere microbiome, plant, china, temperate, rhizosphere, dalian city prefecture)2026-03-01v41 / 4pendingNo
2175gpt-5T. × media rhizosphere bacterial (16S) samples (dominant altitude 50 m, university campus, field, rhizosphere microbiome, plant, taxus media, china, temperate, rhizosphere, dalian city prefecture)2026-03-01v41 / 7pendingNo
2175gpt-5T. mairei rhizosphere bacterial (16S) samples (dominant subtropical, field, rhizosphere microbiome, plant, taxus mairei, nanjing city prefecture, china, altitude 200 m, rhizosphere, botanical garden)2026-03-01v41 / 11pendingNo
2175gpt-5Rhizosphere microbiome: Taxus × media vs Taxus cuspidata var. nana (16S) ( high in taxus cuspidata compared to taxus media in altitude 50 m university campus field rhizosphere microbiome plant china temperate rhizosphere dalian city prefecture )2026-03-01v41 / 305pendingNo
2175gpt-5Rhizosphere microbiome: Taxus × media vs Taxus cuspidata var. nana (16S) ( high in taxus media compared to taxus cuspidata in altitude 50 m university campus field rhizosphere microbiome plant china temperate rhizosphere dalian city prefecture )2026-03-01v41 / 375pendingNo
2175gpt-5Rhizosphere microbiome: Taxus mairei vs Taxus cuspidata var. nana (16S) ( high in altitude 50 m taxus cuspidata university campus temperate dalian city prefecture compared to subtropical taxus mairei nanjing city prefecture altitude 200 m botanical garden in field rhizosphere microbiome plant china rhizosphere )2026-03-01v41 / 689pendingNo
2175gpt-5Rhizosphere microbiome: Taxus mairei vs Taxus cuspidata var. nana (16S) ( high in subtropical taxus mairei nanjing city prefecture altitude 200 m botanical garden compared to altitude 50 m taxus cuspidata university campus temperate dalian city prefecture in field rhizosphere microbiome plant china rhizosphere )2026-03-01v41 / 708pendingNo
2175gpt-5Rhizosphere microbiome: Taxus mairei vs Taxus × media (16S) ( high in subtropical taxus mairei nanjing city prefecture altitude 200 m botanical garden compared to altitude 50 m university campus taxus media temperate dalian city prefecture in field rhizosphere microbiome plant china rhizosphere )2026-03-01v41 / 741pendingNo
2175gpt-5Rhizosphere microbiome: Taxus mairei vs Taxus × media (16S) ( high in altitude 50 m university campus taxus media temperate dalian city prefecture compared to subtropical taxus mairei nanjing city prefecture altitude 200 m botanical garden in field rhizosphere microbiome plant china rhizosphere )2026-03-01v41 / 900pendingNo
2175gpt-5T. mairei rhizosphere bacterial (16S) samples (common subtropical, field, rhizosphere microbiome, plant, taxus mairei, nanjing city prefecture, china, altitude 200 m, rhizosphere, botanical garden)2026-03-01v41 / 1042pendingNo
2175gpt-5T. cuspidata var. nana rhizosphere bacterial (16S) samples (common altitude 50 m, taxus cuspidata, university campus, field, rhizosphere microbiome, plant, china, temperate, rhizosphere, dalian city prefecture)2026-03-01v41 / 1094pendingNo
2175gpt-5T. × media rhizosphere bacterial (16S) samples (common altitude 50 m, university campus, field, rhizosphere microbiome, plant, taxus media, china, temperate, rhizosphere, dalian city prefecture)2026-03-01v41 / 1305pendingNo

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