Experiment ID: 214

Field Description
nameinteractions between gut microbiota, host genetics and diet in the development of metabolic syndrome
sraerp010838
sraprjeb9702
datamd566087ba7baad7a121a4df88d5d5ddf94
mapmd579aea80c522c27daffb0f889acb26896

Annotations for experiment:

term enrichment score
TermScore
strain 129s0.466667
LOWER IN c57bl/6j0.181818
jackson laboratories0.178571
c57bl/6j0.136364
mouse chow0.115702
high fat diet0.115702
nih 31m chow0.111111
LOWER IN nih 31m chow0.111111
LOWER IN strain 129s0.111111
strain s1290.111111
LOWER IN strain s1290.111111
LOWER IN taconic farms0.105263
taconic farms0.100000
LOWER IN jackson laboratories0.100000
LOWER IN high fat diet0.066667
diet0.062500
LOWER IN mouse chow0.060606
mouse0.029851
mus musculus0.027027
research facility0.010417
united states of america0.006645
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
nih 31m chow0.500000
LOWER IN nih 31m chow0.500000
strain 129s0.500000
LOWER IN strain 129s0.500000
strain s1290.500000
LOWER IN strain s1290.500000
LOWER IN c57bl/6j0.333333
LOWER IN taconic farms0.333333
taconic farms0.250000
LOWER IN jackson laboratories0.250000
jackson laboratories0.125000
c57bl/6j0.083333
LOWER IN high fat diet0.071429
mouse chow0.066667
high fat diet0.066667
LOWER IN mouse chow0.058824
diet0.041667
mouse0.015152
mus musculus0.013699
research facility0.005236
united states of america0.003333
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
feces1.000000
united states of america1.000000
research facility1.000000
mus musculus1.000000
mouse1.000000
mouse chow0.437500
high fat diet0.437500
strain 129s0.437500
c57bl/6j0.375000
jackson laboratories0.312500
diet0.125000
LOWER IN c57bl/6j0.125000
nih 31m chow0.062500
LOWER IN high fat diet0.062500
LOWER IN mouse chow0.062500
LOWER IN nih 31m chow0.062500
taconic farms0.062500
LOWER IN jackson laboratories0.062500
LOWER IN taconic farms0.062500
LOWER IN strain 129s0.062500
strain s1290.062500
LOWER IN strain s1290.062500
Number of experiments associating the term to the sequence
TermScore
diet1.000000
mouse chow1.000000
nih 31m chow1.000000
LOWER IN high fat diet1.000000
feces1.000000
united states of america1.000000
research facility1.000000
mus musculus1.000000
mouse1.000000
high fat diet1.000000
LOWER IN mouse chow1.000000
LOWER IN nih 31m chow1.000000
taconic farms1.000000
LOWER IN jackson laboratories1.000000
strain 129s1.000000
LOWER IN c57bl/6j1.000000
jackson laboratories1.000000
LOWER IN taconic farms1.000000
c57bl/6j1.000000
LOWER IN strain 129s1.000000
strain s1291.000000
LOWER IN strain s1291.000000
Exp. ID User ID Description Date Region Sequences Status Flag
214amnondominant feces, united states of america, research facility, mus musculus, mouse, mouse chow, strain 129s2017-10-23v41 / 13approvedNo
214amnondominant feces, united states of america, research facility, mus musculus, c57bl/6j, mouse, mouse chow2017-10-23v41 / 14approvedNo
214amnondominant feces, united states of america, research facility, mus musculus, c57bl/6j, high fat diet, mouse2017-10-23v41 / 16approvedNo
214amnondominant feces, united states of america, research facility, mus musculus, high fat diet, mouse, strain 129s2017-10-23v41 / 18approvedNo
214amnoncommon feces, united states of america, research facility, mus musculus, c57bl/6j, mouse, mouse chow2017-10-23v41 / 60approvedNo
214amnoncommon feces, united states of america, research facility, mus musculus, c57bl/6j, high fat diet, mouse2017-10-23v41 / 62approvedNo
214amnoncommon feces, united states of america, research facility, mus musculus, high fat diet, mouse, strain 129s2017-10-23v41 / 89approvedNo
214amnoncommon feces, united states of america, research facility, mus musculus, mouse, mouse chow, strain 129s2017-10-23v41 / 95approvedNo
214amnon high in c57bl/6j compared to strain s129 in feces united states of america research facility mus musculus high fat diet mouse jackson laboratories 2017-10-23v41 / 113approvedNo
214amnon high in strain s129 compared to c57bl/6j in feces united states of america research facility mus musculus high fat diet mouse jackson laboratories 2017-10-23v41 / 148approvedNo
214amnon high in c57bl/6j compared to strain 129s in feces united states of america research facility mus musculus mouse mouse chow jackson laboratories 2017-10-23v41 / 154approvedNo
214amnonhigher in mice from jackson laboratories compared to taconic farms ( high in jackson laboratories compared to taconic farms in feces united states of america research facility mus musculus mouse strain 129s )2017-10-23v41 / 181approvedNo
214amnon high in strain 129s compared to c57bl/6j in feces united states of america research facility mus musculus mouse mouse chow jackson laboratories 2017-10-23v41 / 207approvedNo
214amnonlower in mice from jackson laboratories compared to taconic farms ( high in taconic farms compared to jackson laboratories in feces united states of america research facility mus musculus mouse strain 129s )2017-10-23v41 / 232approvedNo
214amnon high in diet high fat diet compared to mouse chow nih 31m chow in feces united states of america research facility mus musculus mouse 2017-10-23v41 / 255approvedNo
214amnon high in diet mouse chow nih 31m chow compared to high fat diet in feces united states of america research facility mus musculus mouse 2017-10-23v41 / 495approvedNo

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