Experiment ID: 2135

Field Description
namegut microbiome and dietary patterns in different saudi populations and monkeys (5006041) - gpt-5
proj_id5006041
sraprjeb9815
date_of_upload07/01/2026 15:44
doi10.1038/srep32191
modelgpt-5
sample_groups_version15
dbbact_id1056
dbbact_linkhttps://dbbact.org/exp_info/1056
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
saudi arabia0.333333
bedouin0.322581
LOWER IN urban biome0.315789
primates0.285714
makkah province0.285714
fermented corn0.285714
fermented milk0.285714
LOWER IN bedouin0.240000
LOWER IN primates0.222222
LOWER IN makkah province0.222222
LOWER IN fermented milk0.222222
urban biome0.196078
western diet0.196078
LOWER IN homo sapiens0.181818
LOWER IN fermented corn0.181818
LOWER IN western diet0.162162
LOWER IN human adult stage0.153846
LOWER IN farm0.133333
LOWER IN female organism0.060606
male organism0.054054
LOWER IN wild0.054054
female organism0.037736
LOWER IN feces0.029851
wild0.025974
human adult stage0.022989
farm0.022472
homo sapiens0.002587
feces0.002293
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN urban biome1.000000
LOWER IN primates1.000000
LOWER IN makkah province1.000000
LOWER IN fermented milk1.000000
primates0.333333
makkah province0.333333
LOWER IN homo sapiens0.333333
LOWER IN bedouin0.333333
bedouin0.333333
fermented corn0.333333
fermented milk0.333333
LOWER IN fermented corn0.333333
LOWER IN human adult stage0.200000
saudi arabia0.200000
LOWER IN western diet0.142857
urban biome0.142857
western diet0.142857
LOWER IN farm0.142857
LOWER IN female organism0.058824
LOWER IN wild0.034483
male organism0.030303
female organism0.027027
LOWER IN feces0.016949
wild0.013699
farm0.011765
human adult stage0.011765
homo sapiens0.001297
feces0.001148
Fraction of annotations for the query sequences containing the term
TermScore
saudi arabia1.000000
feces0.750000
homo sapiens0.500000
human adult stage0.500000
rural area0.312500
jeddah0.312500
urban biome0.312500
western diet0.312500
bedouin0.312500
landfill0.250000
primates0.250000
makkah province0.250000
governorate of al-taif0.250000
wild0.250000
papio hamadryas0.250000
farm0.250000
male organism0.250000
bedouin diet0.250000
fermented corn0.250000
millet flour0.250000
fermented milk0.250000
food sample0.250000
lohoh0.250000
LOWER IN rural area0.187500
LOWER IN jeddah0.187500
LOWER IN urban biome0.187500
LOWER IN western diet0.187500
LOWER IN bedouin0.187500
LOWER IN homo sapiens0.125000
LOWER IN human adult stage0.125000
LOWER IN landfill0.125000
LOWER IN primates0.125000
LOWER IN makkah province0.125000
LOWER IN governorate of al-taif0.125000
LOWER IN wild0.125000
LOWER IN papio hamadryas0.125000
LOWER IN farm0.125000
LOWER IN feces0.125000
LOWER IN bedouin diet0.125000
LOWER IN fermented corn0.125000
LOWER IN millet flour0.125000
LOWER IN fermented milk0.125000
LOWER IN food sample0.125000
LOWER IN lohoh0.125000
female organism0.062500
LOWER IN female organism0.062500
Number of experiments associating the term to the sequence
TermScore
landfill1.000000
primates1.000000
makkah province1.000000
governorate of al-taif1.000000
wild1.000000
papio hamadryas1.000000
farm1.000000
LOWER IN rural area1.000000
LOWER IN jeddah1.000000
LOWER IN homo sapiens1.000000
LOWER IN urban biome1.000000
LOWER IN western diet1.000000
LOWER IN bedouin1.000000
LOWER IN human adult stage1.000000
feces1.000000
saudi arabia1.000000
rural area1.000000
jeddah1.000000
homo sapiens1.000000
urban biome1.000000
western diet1.000000
bedouin1.000000
human adult stage1.000000
LOWER IN landfill1.000000
LOWER IN primates1.000000
LOWER IN makkah province1.000000
LOWER IN governorate of al-taif1.000000
LOWER IN wild1.000000
LOWER IN papio hamadryas1.000000
LOWER IN farm1.000000
female organism1.000000
male organism1.000000
LOWER IN female organism1.000000
bedouin diet1.000000
fermented corn1.000000
millet flour1.000000
fermented milk1.000000
food sample1.000000
lohoh1.000000
LOWER IN feces1.000000
LOWER IN bedouin diet1.000000
LOWER IN fermented corn1.000000
LOWER IN millet flour1.000000
LOWER IN fermented milk1.000000
LOWER IN food sample1.000000
LOWER IN lohoh1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2135gpt-5Baboon stool samples (16S amplicon) (dominant landfill, saudi arabia, primates, makkah province, governorate of al-taif, wild, papio hamadryas, feces, farm)2026-01-07v31 / 8pendingNo
2135gpt-5Human gut vs fermented food microbiomes (potential diet–microbe reservoir comparison; 16S amplicon) ( high in rural area jeddah homo sapiens urban biome western diet bedouin human adult stage feces compared to bedouin diet fermented corn millet flour fermented milk food sample lohoh in saudi arabia )2026-01-07v31 / 18pendingNo
2135gpt-5Urban Saudi human stool samples (16S amplicon) (dominant saudi arabia, jeddah, male organism, homo sapiens, urban biome, western diet, human adult stage, feces)2026-01-07v31 / 20pendingNo
2135gpt-5Fermented food samples (Lohoh; 16S amplicon) (dominant bedouin diet, saudi arabia, fermented corn, millet flour, fermented milk, food sample, lohoh)2026-01-07v31 / 20pendingNo
2135gpt-5Bedouin human stool samples (16S amplicon) (dominant rural area, saudi arabia, homo sapiens, bedouin, human adult stage, feces)2026-01-07v31 / 21pendingNo
2135gpt-5Urban Saudi human stool samples (16S amplicon) (common saudi arabia, jeddah, male organism, homo sapiens, urban biome, western diet, human adult stage, feces)2026-01-07v31 / 46pendingNo
2135gpt-5Fermented food samples (Lohoh; 16S amplicon) (common bedouin diet, saudi arabia, fermented corn, millet flour, fermented milk, food sample, lohoh)2026-01-07v31 / 82pendingNo
2135gpt-5Bedouin human stool samples (16S amplicon) (common rural area, saudi arabia, homo sapiens, bedouin, human adult stage, feces)2026-01-07v31 / 115pendingNo
2135gpt-5Human gut vs fermented food microbiomes (potential diet–microbe reservoir comparison; 16S amplicon) ( high in bedouin diet fermented corn millet flour fermented milk food sample lohoh compared to rural area jeddah homo sapiens urban biome western diet bedouin human adult stage feces in saudi arabia )2026-01-07v31 / 142pendingNo
2135gpt-5Baboon stool samples (16S amplicon) (common landfill, saudi arabia, primates, makkah province, governorate of al-taif, wild, papio hamadryas, feces, farm)2026-01-07v31 / 145pendingNo
2135gpt-5Non-human primate gut vs fermented food microbiomes (16S amplicon) ( high in landfill primates makkah province governorate of al-taif wild papio hamadryas feces farm compared to bedouin diet fermented corn millet flour fermented milk food sample lohoh in saudi arabia )2026-01-07v31 / 149pendingNo
2135gpt-5Non-human primate gut vs fermented food microbiomes (16S amplicon) ( high in bedouin diet fermented corn millet flour fermented milk food sample lohoh compared to landfill primates makkah province governorate of al-taif wild papio hamadryas feces farm in saudi arabia )2026-01-07v31 / 183pendingNo
2135gpt-5Pastoral/nomadic vs urban human gut microbiomes (Bedouin vs Urban Saudi; 16S amplicon) ( high in jeddah urban biome western diet compared to rural area bedouin female organism in male organism saudi arabia homo sapiens human adult stage feces )2026-01-07v31 / 195pendingNo
2135gpt-5Pastoral/nomadic vs urban human gut microbiomes (Bedouin vs Urban Saudi; 16S amplicon) ( high in rural area bedouin female organism compared to jeddah urban biome western diet in male organism saudi arabia homo sapiens human adult stage feces )2026-01-07v31 / 569pendingNo
2135gpt-5Human (Bedouin + Urban Saudi) vs non-human primate gut microbiomes (16S amplicon) ( high in rural area jeddah homo sapiens urban biome western diet bedouin human adult stage compared to landfill primates makkah province governorate of al-taif wild papio hamadryas farm in feces saudi arabia )2026-01-07v31 / 606pendingNo
2135gpt-5Human (Bedouin + Urban Saudi) vs non-human primate gut microbiomes (16S amplicon) ( high in landfill primates makkah province governorate of al-taif wild papio hamadryas farm compared to rural area jeddah homo sapiens urban biome western diet bedouin human adult stage in feces saudi arabia )2026-01-07v31 / 1546pendingNo

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