dbBact

This is the development server

Experiment ID: 213

Field	Description
name	microbial composition predicts genital tract inflammation and persistent bacterial vaginosis in adolescent south african women
sra	erp017263
sra	prjeb15497
datamd5	be00de6a9d82c847811764b7cb7708b9
mapmd5	e9463e5cf696c2ec45dd677f7f021225

Annotations for experiment:

term enrichment score

Term	Score
LOWER IN bacterial vaginosis	0.333333
bacterial vaginosis	0.333333
south africa	0.166667
vagina	0.117647
LOWER IN control	0.008929
control	0.008734
homo sapiens	0.005168

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN bacterial vaginosis	0.500000
bacterial vaginosis	0.500000
south africa	0.090909
vagina	0.062500
LOWER IN control	0.004545
control	0.004444
homo sapiens	0.002591

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
vagina	1.000000
south africa	1.000000
control	0.250000
LOWER IN bacterial vaginosis	0.250000
bacterial vaginosis	0.250000
LOWER IN control	0.250000

Number of experiments associating the term to the sequence

Term	Score
control	1.000000
LOWER IN bacterial vaginosis	1.000000
homo sapiens	1.000000
vagina	1.000000
south africa	1.000000
bacterial vaginosis	1.000000
LOWER IN control	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
213	amnon	dominant homo sapiens, vagina, south africa	2017-10-22	v4	1 / 16	approved	No
213	amnon	higher in patients with bacterial vaginosis compared to healthy controls ( high in bacterial vaginosis compared to control in homo sapiens vagina south africa )	2017-10-31	v4	1 / 38	approved	No
213	amnon	common homo sapiens, vagina, south africa	2017-10-22	v4	1 / 103	approved	No
213	amnon	lower in patients with bacterial vaginosis compared to healthy controls ( high in control compared to bacterial vaginosis in homo sapiens vagina south africa )	2017-10-31	v4	1 / 107	approved	No

Problems / suggestions? Please visit the dbBact forum