Experiment ID: 2101

Field Description
namecontext-dependent dynamics lead to the assembly of functionally distinct microbial communities (7080782) - gpt-5
proj_id7080782
sraprjna559886
date_of_upload29/12/2025 01:22
doi10.1038/s41467-020-15169-0
modelgpt-5
sample_groups_version15
dbbact_id614
dbbact_linkhttps://dbbact.org/exp_info/614
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
chitin beads0.666667
pitcher fluid0.666667
sarracenia purpurea0.666667
chitin-based cuticle0.666667
pitcher plant0.666667
harvard forest0.666667
day 30.500000
LOWER IN day 30.250000
commonwealth of massachusetts0.200000
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
chitin beads0.500000
pitcher fluid0.500000
sarracenia purpurea0.500000
day 30.500000
chitin-based cuticle0.500000
pitcher plant0.500000
harvard forest0.500000
LOWER IN day 30.500000
commonwealth of massachusetts0.111111
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
chitosan1.000000
chitin beads1.000000
bodily fluid1.000000
bacteria latreille et al. 18251.000000
pitcher fluid1.000000
freshwater environment1.000000
sarracenia purpurea1.000000
protozoa1.000000
microcosm1.000000
chitin-based cuticle1.000000
pitcher plant1.000000
harvard forest1.000000
commonwealth of massachusetts1.000000
early stage0.500000
day 30.500000
day 630.500000
near-equilibrium0.500000
LOWER IN near-equilibrium0.166667
LOWER IN day 630.166667
LOWER IN early stage0.166667
LOWER IN day 30.166667
Number of experiments associating the term to the sequence
TermScore
united states of america1.000000
chitosan1.000000
chitin beads1.000000
bodily fluid1.000000
early stage1.000000
bacteria latreille et al. 18251.000000
pitcher fluid1.000000
freshwater environment1.000000
sarracenia purpurea1.000000
protozoa1.000000
microcosm1.000000
day 31.000000
chitin-based cuticle1.000000
pitcher plant1.000000
harvard forest1.000000
commonwealth of massachusetts1.000000
day 631.000000
near-equilibrium1.000000
LOWER IN near-equilibrium1.000000
LOWER IN day 631.000000
LOWER IN early stage1.000000
LOWER IN day 31.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2101gpt-5Early succession vs near-equilibrium in filtered microcosms ( high in near-equilibrium day 63 compared to early stage day 3 in chitosan chitin beads united states of america bodily fluid bacteria latreille et al. 1825 freshwater environment microcosm sarracenia purpurea protozoa chitin-based cuticle harvard forest pitcher plant pitcher fluid commonwealth of massachusetts )2025-12-29v41 / 6pendingNo
2101gpt-5Filtered microcosms at early stage (Day 3) + Unfiltered microcosms at early stage (Day 3) (dominant united states of america, chitosan, chitin beads, bodily fluid, early stage, bacteria latreille et al. 1825, pitcher fluid, freshwater environment, sarracenia purpurea, protozoa, microcosm, day 3, chitin-based cuticle, pitcher plant, harvard forest, commonwealth of massachusetts)2025-12-29v41 / 20pendingNo
2101gpt-5Unfiltered microcosms at near-equilibrium (Day 63) + Filtered microcosms at near-equilibrium (Day 63) (dominant united states of america, chitosan, chitin beads, bodily fluid, day 63, bacteria latreille et al. 1825, pitcher fluid, freshwater environment, sarracenia purpurea, protozoa, microcosm, near-equilibrium, chitin-based cuticle, pitcher plant, harvard forest, commonwealth of massachusetts)2025-12-29v41 / 21pendingNo
2101gpt-5Unfiltered microcosms at near-equilibrium (Day 63) + Filtered microcosms at near-equilibrium (Day 63) (common united states of america, chitosan, chitin beads, bodily fluid, day 63, bacteria latreille et al. 1825, pitcher fluid, freshwater environment, sarracenia purpurea, protozoa, microcosm, near-equilibrium, chitin-based cuticle, pitcher plant, harvard forest, commonwealth of massachusetts)2025-12-29v41 / 22pendingNo
2101gpt-5Early succession vs near-equilibrium in filtered microcosms ( high in early stage day 3 compared to near-equilibrium day 63 in chitosan chitin beads united states of america bodily fluid bacteria latreille et al. 1825 freshwater environment microcosm sarracenia purpurea protozoa chitin-based cuticle harvard forest pitcher plant pitcher fluid commonwealth of massachusetts )2025-12-29v41 / 22pendingNo
2101gpt-5Filtered microcosms at early stage (Day 3) + Unfiltered microcosms at early stage (Day 3) (common united states of america, chitosan, chitin beads, bodily fluid, early stage, bacteria latreille et al. 1825, pitcher fluid, freshwater environment, sarracenia purpurea, protozoa, microcosm, day 3, chitin-based cuticle, pitcher plant, harvard forest, commonwealth of massachusetts)2025-12-29v41 / 31pendingNo

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