Experiment ID: 2100

Field Description
namecftr dysregulation drives active selection of the gut microbiome (6994172) - gpt-5
proj_id6994172
sraprjeb32648
date_of_upload29/12/2025 01:20
doi10.1371/journal.ppat.1008251
modelgpt-5
sample_groups_version15
dbbact_id619
dbbact_linkhttps://dbbact.org/exp_info/619
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
seattle0.666667
cystic fibrosis0.250000
small intestine0.250000
LOWER IN cystic fibrosis0.250000
LOWER IN small intestine0.166667
caecum0.039216
mus musculus0.027027
LOWER IN control0.008850
control0.008811
united states of america0.006645
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
seattle0.500000
LOWER IN cystic fibrosis0.500000
cystic fibrosis0.166667
small intestine0.166667
LOWER IN small intestine0.166667
caecum0.020000
mus musculus0.013699
LOWER IN control0.004545
control0.004444
united states of america0.003333
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
fecal microbiota transplantation1.000000
specific pathogen free1.000000
united states of america1.000000
seattle1.000000
mus musculus1.000000
caecum1.000000
germ-free1.000000
feces1.000000
laboratory facility1.000000
cystic fibrosis0.500000
cftr mutation0.500000
small intestine0.500000
control0.500000
LOWER IN control0.166667
LOWER IN cftr mutation0.166667
LOWER IN cystic fibrosis0.166667
LOWER IN small intestine0.166667
Number of experiments associating the term to the sequence
TermScore
fecal microbiota transplantation1.000000
specific pathogen free1.000000
united states of america1.000000
seattle1.000000
cystic fibrosis1.000000
mus musculus1.000000
caecum1.000000
germ-free1.000000
cftr mutation1.000000
feces1.000000
laboratory facility1.000000
small intestine1.000000
control1.000000
LOWER IN control1.000000
LOWER IN cftr mutation1.000000
LOWER IN cystic fibrosis1.000000
LOWER IN small intestine1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2100gpt-5CFTR-mutant (CF) vs non-CF mouse gut microbiome (amplicon) ( high in control compared to cftr mutation cystic fibrosis small intestine in fecal microbiota transplantation specific pathogen free united states of america seattle mus musculus caecum germ-free feces laboratory facility )2025-12-29v31 / 1pendingNo
2100gpt-5CFTR-mutant (CF) mouse gut samples (dominant fecal microbiota transplantation, specific pathogen free, united states of america, seattle, cystic fibrosis, mus musculus, caecum, germ-free, cftr mutation, feces, laboratory facility, small intestine)2025-12-29v31 / 20pendingNo
2100gpt-5Non-CF mouse gut samples (dominant fecal microbiota transplantation, specific pathogen free, united states of america, seattle, control, mus musculus, caecum, germ-free, feces, laboratory facility)2025-12-29v31 / 22pendingNo
2100gpt-5CFTR-mutant (CF) vs non-CF mouse gut microbiome (amplicon) ( high in cftr mutation cystic fibrosis small intestine compared to control in fecal microbiota transplantation specific pathogen free united states of america seattle mus musculus caecum germ-free feces laboratory facility )2025-12-29v31 / 38pendingNo
2100gpt-5Non-CF mouse gut samples (common fecal microbiota transplantation, specific pathogen free, united states of america, seattle, control, mus musculus, caecum, germ-free, feces, laboratory facility)2025-12-29v31 / 42pendingNo
2100gpt-5CFTR-mutant (CF) mouse gut samples (common fecal microbiota transplantation, specific pathogen free, united states of america, seattle, cystic fibrosis, mus musculus, caecum, germ-free, cftr mutation, feces, laboratory facility, small intestine)2025-12-29v31 / 64pendingNo

Problems / suggestions? Please visit the dbBact forum