Experiment ID: 2092

Field Description
nameoxidative stress in the oral cavity is driven by individual-specific bacterial communities (6258756) - gpt-5
proj_id6258756
sraprjeb20213
date_of_upload28/12/2025 16:26
doi10.1038/s41522-018-0072-3
modelgpt-5
sample_groups_version15
dbbact_id546
dbbact_linkhttps://dbbact.org/exp_info/546
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
slovak republic0.500000
young adult stage0.200000
male organism0.105263
female organism0.095238
mouth0.076923
saliva0.029412
LOWER IN male organism0.027778
LOWER IN female organism0.026667
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
slovak republic0.333333
LOWER IN male organism0.166667
young adult stage0.111111
LOWER IN female organism0.111111
male organism0.058824
female organism0.052632
mouth0.040000
saliva0.014925
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
young adult stage1.000000
slovak republic1.000000
mouth1.000000
bratislava1.000000
stomodeum1.000000
saliva1.000000
homo sapiens1.000000
female organism0.500000
male organism0.500000
volunteer f120.075758
volunteer f010.075758
volunteer f040.060606
volunteer f130.060606
volunteer m020.060606
volunteer m030.060606
volunteer m010.060606
volunteer m040.060606
volunteer m190.060606
volunteer m070.060606
volunteer f110.045455
volunteer f250.045455
volunteer f060.045455
volunteer f160.045455
volunteer f220.045455
volunteer f210.045455
volunteer f200.045455
volunteer f190.045455
volunteer f180.045455
LOWER IN volunteer f120.045455
volunteer m210.045455
volunteer m050.045455
volunteer m130.045455
volunteer m200.045455
volunteer m080.045455
volunteer m250.045455
volunteer m120.045455
LOWER IN volunteer f010.045455
LOWER IN volunteer m020.030303
LOWER IN volunteer m030.030303
LOWER IN volunteer m010.030303
LOWER IN volunteer m040.030303
LOWER IN volunteer m190.030303
LOWER IN volunteer m070.030303
LOWER IN volunteer f040.030303
LOWER IN volunteer f130.030303
LOWER IN volunteer m210.015152
LOWER IN volunteer m050.015152
LOWER IN volunteer m130.015152
LOWER IN volunteer m200.015152
LOWER IN male organism0.015152
LOWER IN volunteer m080.015152
LOWER IN volunteer m250.015152
LOWER IN volunteer m120.015152
LOWER IN volunteer f110.015152
LOWER IN volunteer f250.015152
LOWER IN volunteer f060.015152
LOWER IN female organism0.015152
LOWER IN volunteer f160.015152
LOWER IN volunteer f220.015152
LOWER IN volunteer f210.015152
LOWER IN volunteer f200.015152
LOWER IN volunteer f190.015152
LOWER IN volunteer f180.015152
Number of experiments associating the term to the sequence
TermScore
volunteer f111.000000
volunteer f251.000000
volunteer f121.000000
volunteer f061.000000
volunteer f041.000000
female organism1.000000
volunteer f161.000000
volunteer f131.000000
volunteer f221.000000
volunteer f211.000000
volunteer f201.000000
volunteer f191.000000
volunteer f181.000000
volunteer f011.000000
LOWER IN volunteer m211.000000
LOWER IN volunteer m021.000000
LOWER IN volunteer m051.000000
LOWER IN volunteer m031.000000
LOWER IN volunteer m011.000000
LOWER IN volunteer m041.000000
LOWER IN volunteer m131.000000
LOWER IN volunteer m191.000000
LOWER IN volunteer m201.000000
LOWER IN male organism1.000000
LOWER IN volunteer m071.000000
LOWER IN volunteer m081.000000
LOWER IN volunteer m251.000000
LOWER IN volunteer m121.000000
young adult stage1.000000
slovak republic1.000000
mouth1.000000
bratislava1.000000
stomodeum1.000000
saliva1.000000
homo sapiens1.000000
LOWER IN volunteer f121.000000
volunteer m211.000000
volunteer m021.000000
volunteer m051.000000
volunteer m031.000000
volunteer m011.000000
volunteer m041.000000
volunteer m131.000000
volunteer m191.000000
volunteer m201.000000
male organism1.000000
volunteer m071.000000
volunteer m081.000000
volunteer m251.000000
volunteer m121.000000
LOWER IN volunteer f111.000000
LOWER IN volunteer f251.000000
LOWER IN volunteer f061.000000
LOWER IN volunteer f041.000000
LOWER IN female organism1.000000
LOWER IN volunteer f161.000000
LOWER IN volunteer f131.000000
LOWER IN volunteer f221.000000
LOWER IN volunteer f211.000000
LOWER IN volunteer f201.000000
LOWER IN volunteer f191.000000
LOWER IN volunteer f181.000000
LOWER IN volunteer f011.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2092gpt-5Volunteer F01 saliva samples (dominant young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, saliva, homo sapiens, volunteer f01)2025-12-28v31 / 8pendingNo
2092gpt-5Volunteer F20 saliva samples (dominant young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, volunteer f20, saliva, homo sapiens)2025-12-28v31 / 10pendingNo
2092gpt-5Volunteer F06 saliva samples (dominant young adult stage, slovak republic, female organism, volunteer f06, mouth, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 11pendingNo
2092gpt-5Volunteer F11 saliva samples (dominant young adult stage, volunteer f11, slovak republic, female organism, mouth, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 11pendingNo
2092gpt-5Volunteer F16 saliva samples (dominant young adult stage, slovak republic, female organism, mouth, bratislava, volunteer f16, stomodeum, saliva, homo sapiens)2025-12-28v31 / 11pendingNo
2092gpt-5Volunteer M20 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m20, saliva, homo sapiens)2025-12-28v31 / 11pendingNo
2092gpt-5Volunteer M25 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, saliva, volunteer m25, homo sapiens)2025-12-28v31 / 11pendingNo
2092gpt-5Volunteer F22 saliva samples (dominant young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, volunteer f22, saliva, homo sapiens)2025-12-28v31 / 12pendingNo
2092gpt-5Volunteer M12 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m12, saliva, homo sapiens)2025-12-28v31 / 12pendingNo
2092gpt-5Volunteer M13 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m13, saliva, homo sapiens)2025-12-28v31 / 12pendingNo
2092gpt-5Volunteer M19 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m19, saliva, homo sapiens)2025-12-28v31 / 12pendingNo
2092gpt-5Volunteer F19 saliva samples (dominant young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, saliva, volunteer f19, homo sapiens)2025-12-28v31 / 13pendingNo
2092gpt-5Volunteer M07 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, saliva, volunteer m07, homo sapiens)2025-12-28v31 / 13pendingNo
2092gpt-5Volunteer F13 saliva samples (dominant young adult stage, slovak republic, female organism, mouth, bratislava, volunteer f13, stomodeum, saliva, homo sapiens)2025-12-28v31 / 14pendingNo
2092gpt-5Volunteer F18 saliva samples (dominant young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, saliva, volunteer f18, homo sapiens)2025-12-28v31 / 14pendingNo
2092gpt-5Volunteer F21 saliva samples (dominant young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, volunteer f21, saliva, homo sapiens)2025-12-28v31 / 14pendingNo
2092gpt-5Volunteer F25 saliva samples (dominant young adult stage, slovak republic, volunteer f25, female organism, mouth, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 14pendingNo
2092gpt-5Volunteer M01 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m01, saliva, homo sapiens)2025-12-28v31 / 14pendingNo
2092gpt-5Volunteer M05 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, bratislava, volunteer m05, stomodeum, saliva, homo sapiens)2025-12-28v31 / 14pendingNo
2092gpt-5Volunteer F04 saliva samples (dominant young adult stage, slovak republic, female organism, mouth, volunteer f04, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 15pendingNo
2092gpt-5Volunteer F12 saliva samples (dominant young adult stage, slovak republic, female organism, volunteer f12, mouth, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 15pendingNo
2092gpt-5Volunteer M03 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m03, saliva, homo sapiens)2025-12-28v31 / 15pendingNo
2092gpt-5Volunteer M08 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, saliva, volunteer m08, homo sapiens)2025-12-28v31 / 15pendingNo
2092gpt-5Volunteer M21 saliva samples (dominant young adult stage, male organism, slovak republic, volunteer m21, mouth, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 15pendingNo
2092gpt-5Volunteer M02 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, volunteer m02, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 16pendingNo
2092gpt-5Volunteer M04 saliva samples (dominant young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m04, saliva, homo sapiens)2025-12-28v31 / 16pendingNo
2092gpt-5Male saliva microbiome: M02 vs M03 ( high in volunteer m03 compared to volunteer m02 in young adult stage slovak republic mouth bratislava stomodeum saliva male organism homo sapiens )2025-12-28v31 / 24pendingNo
2092gpt-5Inter-individual variability in saliva microbiome: M07 vs M19 ( high in volunteer m07 compared to volunteer m19 in young adult stage slovak republic mouth bratislava stomodeum saliva male organism homo sapiens )2025-12-28v31 / 30pendingNo
2092gpt-5Volunteer M07 saliva samples (common young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, saliva, volunteer m07, homo sapiens)2025-12-28v31 / 43pendingNo
2092gpt-5Inter-individual variability in saliva microbiome: F01 vs F04 ( high in volunteer f04 compared to volunteer f01 in young adult stage slovak republic female organism mouth bratislava stomodeum saliva homo sapiens )2025-12-28v31 / 46pendingNo
2092gpt-5Volunteer M03 saliva samples (common young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m03, saliva, homo sapiens)2025-12-28v31 / 49pendingNo
2092gpt-5Volunteer F22 saliva samples (common young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, volunteer f22, saliva, homo sapiens)2025-12-28v31 / 54pendingNo
2092gpt-5Volunteer M19 saliva samples (common young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m19, saliva, homo sapiens)2025-12-28v31 / 54pendingNo
2092gpt-5Volunteer M20 saliva samples (common young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m20, saliva, homo sapiens)2025-12-28v31 / 57pendingNo
2092gpt-5Volunteer F21 saliva samples (common young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, volunteer f21, saliva, homo sapiens)2025-12-28v31 / 58pendingNo
2092gpt-5Volunteer M13 saliva samples (common young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m13, saliva, homo sapiens)2025-12-28v31 / 58pendingNo
2092gpt-5Volunteer M05 saliva samples (common young adult stage, male organism, slovak republic, mouth, bratislava, volunteer m05, stomodeum, saliva, homo sapiens)2025-12-28v31 / 63pendingNo
2092gpt-5Volunteer M08 saliva samples (common young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, saliva, volunteer m08, homo sapiens)2025-12-28v31 / 64pendingNo
2092gpt-5Volunteer F12 saliva samples (common young adult stage, slovak republic, female organism, volunteer f12, mouth, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 67pendingNo
2092gpt-5Volunteer F25 saliva samples (common young adult stage, slovak republic, volunteer f25, female organism, mouth, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 67pendingNo
2092gpt-5Volunteer F19 saliva samples (common young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, saliva, volunteer f19, homo sapiens)2025-12-28v31 / 68pendingNo
2092gpt-5Volunteer M25 saliva samples (common young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, saliva, volunteer m25, homo sapiens)2025-12-28v31 / 68pendingNo
2092gpt-5Volunteer M01 saliva samples (common young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m01, saliva, homo sapiens)2025-12-28v31 / 69pendingNo
2092gpt-5Volunteer M02 saliva samples (common young adult stage, male organism, slovak republic, mouth, volunteer m02, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 69pendingNo
2092gpt-5Volunteer F16 saliva samples (common young adult stage, slovak republic, female organism, mouth, bratislava, volunteer f16, stomodeum, saliva, homo sapiens)2025-12-28v31 / 70pendingNo
2092gpt-5Volunteer F18 saliva samples (common young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, saliva, volunteer f18, homo sapiens)2025-12-28v31 / 70pendingNo
2092gpt-5Volunteer F20 saliva samples (common young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, volunteer f20, saliva, homo sapiens)2025-12-28v31 / 70pendingNo
2092gpt-5Inter-individual variability in saliva microbiome: M01 vs M04 ( high in volunteer m01 compared to volunteer m04 in young adult stage slovak republic mouth bratislava stomodeum saliva male organism homo sapiens )2025-12-28v31 / 72pendingNo
2092gpt-5Volunteer F04 saliva samples (common young adult stage, slovak republic, female organism, mouth, volunteer f04, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 73pendingNo
2092gpt-5Inter-individual variability in saliva microbiome: F12 vs F13 ( high in volunteer f12 compared to volunteer f13 in young adult stage slovak republic female organism mouth bratislava stomodeum saliva homo sapiens )2025-12-28v31 / 73pendingNo
2092gpt-5Volunteer F06 saliva samples (common young adult stage, slovak republic, female organism, volunteer f06, mouth, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 76pendingNo
2092gpt-5Inter-individual variability in saliva microbiome: M07 vs M19 ( high in volunteer m19 compared to volunteer m07 in young adult stage slovak republic mouth bratislava stomodeum saliva male organism homo sapiens )2025-12-28v31 / 77pendingNo
2092gpt-5Female saliva microbiome: F01 vs F12 ( high in volunteer f12 compared to volunteer f01 in young adult stage slovak republic female organism mouth bratislava stomodeum saliva homo sapiens )2025-12-28v31 / 77pendingNo
2092gpt-5Volunteer M12 saliva samples (common young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m12, saliva, homo sapiens)2025-12-28v31 / 78pendingNo
2092gpt-5Volunteer F13 saliva samples (common young adult stage, slovak republic, female organism, mouth, bratislava, volunteer f13, stomodeum, saliva, homo sapiens)2025-12-28v31 / 88pendingNo
2092gpt-5Volunteer F11 saliva samples (common young adult stage, volunteer f11, slovak republic, female organism, mouth, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 94pendingNo
2092gpt-5Volunteer M04 saliva samples (common young adult stage, male organism, slovak republic, mouth, bratislava, stomodeum, volunteer m04, saliva, homo sapiens)2025-12-28v31 / 95pendingNo
2092gpt-5Male saliva microbiome: M02 vs M03 ( high in volunteer m02 compared to volunteer m03 in young adult stage slovak republic mouth bratislava stomodeum saliva male organism homo sapiens )2025-12-28v31 / 101pendingNo
2092gpt-5Volunteer F01 saliva samples (common young adult stage, slovak republic, female organism, mouth, bratislava, stomodeum, saliva, homo sapiens, volunteer f01)2025-12-28v31 / 118pendingNo
2092gpt-5Volunteer M21 saliva samples (common young adult stage, male organism, slovak republic, volunteer m21, mouth, bratislava, stomodeum, saliva, homo sapiens)2025-12-28v31 / 120pendingNo
2092gpt-5Inter-individual variability in saliva microbiome: M01 vs M04 ( high in volunteer m04 compared to volunteer m01 in young adult stage slovak republic mouth bratislava stomodeum saliva male organism homo sapiens )2025-12-28v31 / 133pendingNo
2092gpt-5Inter-individual variability in saliva microbiome: F12 vs F13 ( high in volunteer f13 compared to volunteer f12 in young adult stage slovak republic female organism mouth bratislava stomodeum saliva homo sapiens )2025-12-28v31 / 144pendingNo
2092gpt-5Inter-individual variability in saliva microbiome: F01 vs F04 ( high in volunteer f01 compared to volunteer f04 in young adult stage slovak republic female organism mouth bratislava stomodeum saliva homo sapiens )2025-12-28v31 / 191pendingNo
2092gpt-5Female vs male saliva microbiome across volunteers ( high in volunteer m21 volunteer m02 volunteer m05 volunteer m03 volunteer m01 volunteer m04 volunteer m13 volunteer m19 volunteer m20 male organism volunteer m07 volunteer m08 volunteer m25 volunteer m12 compared to volunteer f11 volunteer f25 volunteer f12 volunteer f06 volunteer f04 female organism volunteer f16 volunteer f13 volunteer f22 volunteer f21 volunteer f20 volunteer f19 volunteer f18 volunteer f01 in young adult stage slovak republic mouth bratislava stomodeum saliva homo sapiens )2025-12-28v31 / 195pendingNo
2092gpt-5Female saliva microbiome: F01 vs F12 ( high in volunteer f01 compared to volunteer f12 in young adult stage slovak republic female organism mouth bratislava stomodeum saliva homo sapiens )2025-12-28v31 / 223pendingNo
2092gpt-5Female vs male saliva microbiome across volunteers ( high in volunteer f11 volunteer f25 volunteer f12 volunteer f06 volunteer f04 female organism volunteer f16 volunteer f13 volunteer f22 volunteer f21 volunteer f20 volunteer f19 volunteer f18 volunteer f01 compared to volunteer m21 volunteer m02 volunteer m05 volunteer m03 volunteer m01 volunteer m04 volunteer m13 volunteer m19 volunteer m20 male organism volunteer m07 volunteer m08 volunteer m25 volunteer m12 in young adult stage slovak republic mouth bratislava stomodeum saliva homo sapiens )2025-12-28v31 / 286pendingNo

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