Experiment ID: 2089

Field Description
nameprofiling the airway in the macaque model of tuberculosis reveals variable microbial dysbiosis and alteration of community structure (6178261) - gpt-5
proj_id6178261
sraprjna436553
date_of_upload28/12/2025 16:23
doi10.1186/s40168-018-0560-y
modelgpt-5
sample_groups_version15
dbbact_id817
dbbact_linkhttps://dbbact.org/exp_info/817
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
macaca fascicularis0.666667
LOWER IN bronchoalveolar lavage0.300000
LOWER IN lung0.300000
bronchoalveolar lavage0.233766
LOWER IN oral wash0.230769
LOWER IN oral cavity0.187500
oral wash0.185185
lung0.173077
LOWER IN mouth0.171429
oral cavity0.087719
mouth0.071942
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
macaca fascicularis0.500000
LOWER IN bronchoalveolar lavage0.500000
LOWER IN lung0.500000
LOWER IN oral wash0.250000
LOWER IN oral cavity0.166667
bronchoalveolar lavage0.142857
LOWER IN mouth0.142857
oral wash0.125000
lung0.100000
oral cavity0.050000
mouth0.040000
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
pittsburgh1.000000
macaca fascicularis1.000000
tuberculosis1.000000
united states of america1.000000
bronchoalveolar lavage0.642857
lung0.642857
left lung lobe0.357143
oral wash0.357143
oral cavity0.357143
mouth0.357143
right lung lobe0.357143
LOWER IN oral wash0.214286
LOWER IN oral cavity0.214286
LOWER IN mouth0.214286
LOWER IN right lung lobe0.214286
LOWER IN left lung lobe0.214286
LOWER IN bronchoalveolar lavage0.214286
LOWER IN lung0.214286
Number of experiments associating the term to the sequence
TermScore
left lung lobe1.000000
bronchoalveolar lavage1.000000
lung1.000000
LOWER IN oral wash1.000000
LOWER IN oral cavity1.000000
LOWER IN mouth1.000000
pittsburgh1.000000
macaca fascicularis1.000000
tuberculosis1.000000
united states of america1.000000
oral wash1.000000
oral cavity1.000000
mouth1.000000
LOWER IN right lung lobe1.000000
LOWER IN left lung lobe1.000000
LOWER IN bronchoalveolar lavage1.000000
LOWER IN lung1.000000
right lung lobe1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2089gpt-5Lung lobe biogeography: left vs right BAL in macaques ( high in right lung lobe compared to left lung lobe in tuberculosis macaca fascicularis bronchoalveolar lavage united states of america pittsburgh lung )2025-12-28v41 / 2pendingNo
2089gpt-5Lung lobe biogeography: left vs right BAL in macaques ( high in left lung lobe compared to right lung lobe in tuberculosis macaca fascicularis bronchoalveolar lavage united states of america pittsburgh lung )2025-12-28v41 / 4pendingNo
2089gpt-5Macaque lung BAL - left lobe (LL) samples (dominant tuberculosis, macaca fascicularis, left lung lobe, bronchoalveolar lavage, united states of america, pittsburgh, lung)2025-12-28v41 / 15pendingNo
2089gpt-5Macaque lung BAL - right lobe (RL) samples (dominant tuberculosis, macaca fascicularis, bronchoalveolar lavage, united states of america, right lung lobe, pittsburgh, lung)2025-12-28v41 / 15pendingNo
2089gpt-5Macaque oral wash (OW) samples (dominant tuberculosis, macaca fascicularis, mouth, oral cavity, united states of america, oral wash, pittsburgh)2025-12-28v41 / 18pendingNo
2089gpt-5Macaque lung BAL - left lobe (LL) samples (common tuberculosis, macaca fascicularis, left lung lobe, bronchoalveolar lavage, united states of america, pittsburgh, lung)2025-12-28v41 / 53pendingNo
2089gpt-5Macaque lung BAL - right lobe (RL) samples (common tuberculosis, macaca fascicularis, bronchoalveolar lavage, united states of america, right lung lobe, pittsburgh, lung)2025-12-28v41 / 55pendingNo
2089gpt-5Macaque oral wash (OW) samples (common tuberculosis, macaca fascicularis, mouth, oral cavity, united states of america, oral wash, pittsburgh)2025-12-28v41 / 72pendingNo
2089gpt-5Oral-lung microbial continuity: oral wash vs right lung BAL ( high in oral wash oral cavity mouth compared to right lung lobe bronchoalveolar lavage lung in pittsburgh macaca fascicularis tuberculosis united states of america )2025-12-28v41 / 96pendingNo
2089gpt-5Oral-lung microbial continuity: oral wash vs right lung BAL ( high in right lung lobe bronchoalveolar lavage lung compared to oral wash oral cavity mouth in pittsburgh macaca fascicularis tuberculosis united states of america )2025-12-28v41 / 126pendingNo
2089gpt-5Upper vs lower respiratory tract microbiome (oral wash vs lung BAL) ( high in right lung lobe left lung lobe bronchoalveolar lavage lung compared to oral wash oral cavity mouth in pittsburgh macaca fascicularis tuberculosis united states of america )2025-12-28v41 / 132pendingNo
2089gpt-5Oral-lung microbial continuity: oral wash vs left lung BAL ( high in oral wash oral cavity mouth compared to left lung lobe bronchoalveolar lavage lung in pittsburgh macaca fascicularis tuberculosis united states of america )2025-12-28v41 / 144pendingNo
2089gpt-5Upper vs lower respiratory tract microbiome (oral wash vs lung BAL) ( high in oral wash oral cavity mouth compared to right lung lobe left lung lobe bronchoalveolar lavage lung in pittsburgh macaca fascicularis tuberculosis united states of america )2025-12-28v41 / 152pendingNo
2089gpt-5Oral-lung microbial continuity: oral wash vs left lung BAL ( high in left lung lobe bronchoalveolar lavage lung compared to oral wash oral cavity mouth in pittsburgh macaca fascicularis tuberculosis united states of america )2025-12-28v41 / 168pendingNo

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