Experiment ID: 2087

Field Description
namea single vibrionales 16s rrna oligotype dominates the intestinal microbiome in two geographically separated atlantic cod populations (6053498) - gpt-5
proj_id6053498
sraprjeb22384
date_of_upload28/12/2025 16:20
doi10.3389/fmicb.2018.01561
modelgpt-5
sample_groups_version15
dbbact_id268
dbbact_linkhttps://dbbact.org/exp_info/268
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
gadus morhua0.666667
intestinal mucosa0.540541
gut content0.339623
hindgut0.285714
kingdom of norway0.222222
LOWER IN gut content0.210526
LOWER IN intestinal mucosa0.111111
wild0.052632
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN intestinal mucosa1.000000
LOWER IN gut content1.000000
gadus morhua0.500000
intestinal mucosa0.500000
gut content0.250000
hindgut0.166667
kingdom of norway0.125000
wild0.027027
Fraction of annotations for the query sequences containing the term
TermScore
kingdom of norway1.000000
gadus morhua1.000000
marine environment1.000000
hindgut1.000000
wild1.000000
august 20140.588235
lofoten islands0.588235
intestinal mucosa0.588235
gut content0.529412
september 20130.411765
sørøya0.411765
LOWER IN august 20140.176471
LOWER IN lofoten islands0.176471
LOWER IN september 20130.176471
LOWER IN sørøya0.176471
LOWER IN gut content0.117647
LOWER IN intestinal mucosa0.058824
Number of experiments associating the term to the sequence
TermScore
september 20131.000000
sørøya1.000000
LOWER IN august 20141.000000
LOWER IN lofoten islands1.000000
LOWER IN intestinal mucosa1.000000
kingdom of norway1.000000
gadus morhua1.000000
marine environment1.000000
hindgut1.000000
wild1.000000
LOWER IN gut content1.000000
august 20141.000000
lofoten islands1.000000
LOWER IN september 20131.000000
LOWER IN sørøya1.000000
gut content1.000000
intestinal mucosa1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2087gpt-5Gut content vs intestinal mucosa in Lofoten Atlantic cod ( high in intestinal mucosa compared to gut content in kingdom of norway lofoten islands gadus morhua marine environment hindgut wild august 2014 )2025-12-28v41 / 1pendingNo
2087gpt-5Lofoten (L0814) Atlantic cod intestinal mucosa (16S amplicon) (dominant kingdom of norway, lofoten islands, gadus morhua, hindgut, marine environment, wild, intestinal mucosa, august 2014)2025-12-28v41 / 7pendingNo
2087gpt-5Sørøya (S0913) Atlantic cod intestinal mucosa (16S amplicon) + Sørøya (S0913) Atlantic cod gut content (16S amplicon) (dominant kingdom of norway, gadus morhua, marine environment, hindgut, wild, september 2013, sørøya)2025-12-28v41 / 7pendingNo
2087gpt-5Lofoten (L0814) Atlantic cod gut content (16S amplicon) (dominant kingdom of norway, lofoten islands, gut content, gadus morhua, hindgut, marine environment, wild, august 2014)2025-12-28v41 / 8pendingNo
2087gpt-5Lofoten (L0814) Atlantic cod mixed gut+mucosa (16S amplicon) (dominant kingdom of norway, lofoten islands, gut content, gadus morhua, hindgut, marine environment, wild, intestinal mucosa, august 2014)2025-12-28v41 / 8pendingNo
2087gpt-5Sørøya (S0913) Atlantic cod mixed gut+mucosa (16S amplicon) (dominant kingdom of norway, gut content, gadus morhua, hindgut, marine environment, wild, intestinal mucosa, september 2013, sørøya)2025-12-28v41 / 10pendingNo
2087gpt-5Body-site specificity is conserved across locations (intestinal mucosa) ( high in august 2014 lofoten islands intestinal mucosa compared to september 2013 sørøya in kingdom of norway gadus morhua marine environment hindgut wild )2025-12-28v41 / 12pendingNo
2087gpt-5Lofoten (L0814) Atlantic cod gut content (16S amplicon) (common kingdom of norway, lofoten islands, gut content, gadus morhua, hindgut, marine environment, wild, august 2014)2025-12-28v41 / 16pendingNo
2087gpt-5Lofoten (L0814) Atlantic cod mixed gut+mucosa (16S amplicon) (common kingdom of norway, lofoten islands, gut content, gadus morhua, hindgut, marine environment, wild, intestinal mucosa, august 2014)2025-12-28v41 / 16pendingNo
2087gpt-5Lofoten (L0814) Atlantic cod intestinal mucosa (16S amplicon) (common kingdom of norway, lofoten islands, gadus morhua, hindgut, marine environment, wild, intestinal mucosa, august 2014)2025-12-28v41 / 19pendingNo
2087gpt-5Body-site specificity is conserved across locations (gut content) ( high in august 2014 gut content lofoten islands compared to september 2013 sørøya in kingdom of norway gadus morhua marine environment hindgut wild )2025-12-28v41 / 19pendingNo
2087gpt-5Location effect on mixed gut+mucosa communities ( high in september 2013 sørøya compared to august 2014 lofoten islands in kingdom of norway gut content gadus morhua marine environment hindgut wild intestinal mucosa )2025-12-28v41 / 19pendingNo
2087gpt-5Sørøya (S0913) Atlantic cod mixed gut+mucosa (16S amplicon) (common kingdom of norway, gut content, gadus morhua, hindgut, marine environment, wild, intestinal mucosa, september 2013, sørøya)2025-12-28v41 / 22pendingNo
2087gpt-5Sørøya (S0913) Atlantic cod intestinal mucosa (16S amplicon) + Sørøya (S0913) Atlantic cod gut content (16S amplicon) (common kingdom of norway, gadus morhua, marine environment, hindgut, wild, september 2013, sørøya)2025-12-28v41 / 26pendingNo
2087gpt-5Location effect on mixed gut+mucosa communities ( high in august 2014 lofoten islands compared to september 2013 sørøya in kingdom of norway gut content gadus morhua marine environment hindgut wild intestinal mucosa )2025-12-28v41 / 29pendingNo
2087gpt-5Body-site specificity is conserved across locations (gut content) ( high in september 2013 sørøya compared to august 2014 gut content lofoten islands in kingdom of norway gadus morhua marine environment hindgut wild )2025-12-28v41 / 33pendingNo
2087gpt-5Body-site specificity is conserved across locations (intestinal mucosa) ( high in september 2013 sørøya compared to august 2014 lofoten islands intestinal mucosa in kingdom of norway gadus morhua marine environment hindgut wild )2025-12-28v41 / 39pendingNo

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