Experiment ID: 2085

Field Description
nameinvestigating colonization of the healthy adult gastrointestinal tract by fungi (5874442) - gpt-5
proj_id5874442
sraprjna379437
date_of_upload28/12/2025 14:36
doi10.1128/msphere.00092-18
modelgpt-5
sample_groups_version15
dbbact_id319
dbbact_linkhttps://dbbact.org/exp_info/319
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
houston0.666667
hypoxia0.320000
LOWER IN diet0.307692
bioreactor0.242424
LOWER IN bioreactor0.173913
LOWER IN homo sapiens0.160000
LOWER IN hypoxia0.160000
LOWER IN oral cavity0.153846
LOWER IN human adult stage0.148148
control diet0.107438
LOWER IN control diet0.094340
oral cavity0.079208
diet0.078431
LOWER IN saliva0.074074
LOWER IN feces0.054054
human adult stage0.045213
saliva0.027682
united states of america0.006645
homo sapiens0.005165
feces0.004570
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN bioreactor1.000000
hypoxia1.000000
houston0.500000
LOWER IN homo sapiens0.500000
LOWER IN hypoxia0.500000
LOWER IN diet0.333333
LOWER IN human adult stage0.333333
bioreactor0.333333
LOWER IN oral cavity0.166667
control diet0.058824
LOWER IN control diet0.058824
LOWER IN saliva0.050000
oral cavity0.050000
diet0.041667
LOWER IN feces0.033333
human adult stage0.023256
saliva0.014925
united states of america0.003333
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
houston1.000000
united states of america1.000000
human adult stage0.809524
homo sapiens0.809524
diet0.666667
feces0.619048
control diet0.619048
LOWER IN diet0.285714
LOWER IN control diet0.238095
rna-derived0.190476
calcareous tooth0.190476
saliva0.190476
oral cavity0.190476
food0.190476
in vitro culture0.190476
cultivated community0.190476
anoxic0.190476
bioreactor0.190476
hypoxia0.190476
LOWER IN calcareous tooth0.142857
LOWER IN saliva0.142857
LOWER IN oral cavity0.142857
LOWER IN feces0.142857
LOWER IN rna-derived0.095238
LOWER IN food0.095238
LOWER IN human adult stage0.095238
LOWER IN homo sapiens0.095238
LOWER IN in vitro culture0.095238
LOWER IN cultivated community0.095238
LOWER IN anoxic0.095238
LOWER IN bioreactor0.095238
LOWER IN hypoxia0.095238
Number of experiments associating the term to the sequence
TermScore
feces1.000000
diet1.000000
rna-derived1.000000
control diet1.000000
LOWER IN calcareous tooth1.000000
LOWER IN saliva1.000000
LOWER IN oral cavity1.000000
houston1.000000
human adult stage1.000000
homo sapiens1.000000
united states of america1.000000
calcareous tooth1.000000
saliva1.000000
oral cavity1.000000
LOWER IN feces1.000000
LOWER IN diet1.000000
LOWER IN control diet1.000000
LOWER IN rna-derived1.000000
LOWER IN food1.000000
food1.000000
LOWER IN human adult stage1.000000
LOWER IN homo sapiens1.000000
LOWER IN in vitro culture1.000000
LOWER IN cultivated community1.000000
LOWER IN anoxic1.000000
LOWER IN bioreactor1.000000
LOWER IN hypoxia1.000000
in vitro culture1.000000
cultivated community1.000000
anoxic1.000000
bioreactor1.000000
hypoxia1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2085gpt-5Gut-simulating bioreactor communities (cultivated human feces) (common feces, in vitro culture, united states of america, cultivated community, anoxic, human adult stage, bioreactor, houston, homo sapiens, hypoxia)2025-12-28v41 / 1pendingNo
2085gpt-5In vivo stool microbiome vs ex vivo gut-simulating bioreactor communities ( high in in vitro culture cultivated community anoxic bioreactor hypoxia compared to diet control diet in feces united states of america human adult stage houston homo sapiens )2025-12-28v41 / 1pendingNo
2085gpt-5Transcriptionally active stool microbiome vs bioreactor communities ( high in in vitro culture cultivated community anoxic bioreactor hypoxia compared to diet rna-derived control diet in feces united states of america human adult stage houston homo sapiens )2025-12-28v41 / 2pendingNo
2085gpt-5Diet/food amplicon samples (controlled diet components) (common diet, united states of america, control diet, food, houston)2025-12-28v41 / 6pendingNo
2085gpt-5Human fecal DNA amplicon samples (stool, all diets; exclude dish/blender controls) (common feces, diet, united states of america, control diet, human adult stage, houston, homo sapiens)2025-12-28v41 / 9pendingNo
2085gpt-5Diet/food microbiome vs human stool DNA profiles (potential foodborne signal in feces) ( high in feces human adult stage homo sapiens compared to diet food in houston diet united states of america control diet )2025-12-28v41 / 10pendingNo
2085gpt-5Human fecal RNA-derived amplicon samples (stool cDNA; exclude dish/blender controls) (dominant feces, diet, united states of america, control diet, human adult stage, houston, homo sapiens, rna-derived)2025-12-28v41 / 11pendingNo
2085gpt-5Human fecal RNA-derived amplicon samples (stool cDNA; exclude dish/blender controls) (common feces, diet, united states of america, control diet, human adult stage, houston, homo sapiens, rna-derived)2025-12-28v41 / 12pendingNo
2085gpt-5Human fecal DNA amplicon samples (stool, all diets; exclude dish/blender controls) (dominant feces, diet, united states of america, control diet, human adult stage, houston, homo sapiens)2025-12-28v41 / 17pendingNo
2085gpt-5Diet/food amplicon samples (controlled diet components) (dominant diet, united states of america, control diet, food, houston)2025-12-28v41 / 17pendingNo
2085gpt-5In vivo stool microbiome vs ex vivo gut-simulating bioreactor communities ( high in diet control diet compared to in vitro culture cultivated community anoxic bioreactor hypoxia in feces united states of america human adult stage houston homo sapiens )2025-12-28v41 / 17pendingNo
2085gpt-5Gut-simulating bioreactor communities (cultivated human feces) (dominant feces, in vitro culture, united states of america, cultivated community, anoxic, human adult stage, bioreactor, houston, homo sapiens, hypoxia)2025-12-28v41 / 18pendingNo
2085gpt-5Transcriptionally active stool microbiome vs bioreactor communities ( high in diet rna-derived control diet compared to in vitro culture cultivated community anoxic bioreactor hypoxia in feces united states of america human adult stage houston homo sapiens )2025-12-28v41 / 20pendingNo
2085gpt-5Human saliva amplicon samples (dominant oral cavity, saliva, united states of america, calcareous tooth, human adult stage, houston, homo sapiens)2025-12-28v41 / 23pendingNo
2085gpt-5Diet/food microbiome vs human stool DNA profiles (potential foodborne signal in feces) ( high in diet food compared to feces human adult stage homo sapiens in houston diet united states of america control diet )2025-12-28v41 / 23pendingNo
2085gpt-5Diet/food microbiome vs human saliva (food-associated vs oral communities) ( high in diet food control diet compared to oral cavity saliva calcareous tooth human adult stage homo sapiens in houston united states of america )2025-12-28v41 / 70pendingNo
2085gpt-5Diet/food microbiome vs human saliva (food-associated vs oral communities) ( high in oral cavity saliva calcareous tooth human adult stage homo sapiens compared to diet food control diet in houston united states of america )2025-12-28v41 / 221pendingNo
2085gpt-5Oral vs gut microbiome within humans (saliva vs stool DNA) ( high in feces diet control diet compared to calcareous tooth saliva oral cavity in houston human adult stage homo sapiens united states of america )2025-12-28v41 / 294pendingNo
2085gpt-5Oral vs transcriptionally active gut microbiome (saliva vs stool cDNA) ( high in calcareous tooth saliva oral cavity compared to feces diet rna-derived control diet in houston human adult stage homo sapiens united states of america )2025-12-28v41 / 354pendingNo
2085gpt-5Oral vs gut microbiome within humans (saliva vs stool DNA) ( high in calcareous tooth saliva oral cavity compared to feces diet control diet in houston human adult stage homo sapiens united states of america )2025-12-28v41 / 389pendingNo
2085gpt-5Oral vs transcriptionally active gut microbiome (saliva vs stool cDNA) ( high in feces diet rna-derived control diet compared to calcareous tooth saliva oral cavity in houston human adult stage homo sapiens united states of america )2025-12-28v41 / 394pendingNo

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