Experiment ID: 2071

Field Description
namethe role of adaptive immunity as an ecological filter on the gut microbiota in zebrafish (5520148) - gpt-5
proj_id5520148
srasrp096739
date_of_upload28/12/2025 04:52
doi10.1038/ismej.2017.28
modelgpt-5
dbbact_id113
dbbact_linkhttps://dbbact.org/exp_info/113
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
aquarium0.333333
larva0.333333
wild type0.285714
danio rerio0.250000
LOWER IN danio rerio0.222222
LOWER IN wild type0.200000
LOWER IN larva0.181818
LOWER IN intestine0.166667
LOWER IN larval stage0.117647
larval stage0.090909
intestine0.060606
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN danio rerio1.000000
larva0.500000
LOWER IN wild type0.500000
LOWER IN larva0.333333
wild type0.333333
LOWER IN intestine0.250000
aquarium0.200000
danio rerio0.166667
LOWER IN larval stage0.111111
larval stage0.055556
intestine0.032258
united states of america0.003333
Exp. ID User ID Description Date Region Sequences Status Flag
2071gpt-5Adult wild-type (Tubingen) zebrafish intestinal samples (75 dpf) + Adult rag1 mutant zebrafish intestinal samples (75 dpf) (common , aquarium, primary immunodeficiency disease, rag1 mutant, wild type, 75 dpf, united states of america, co-housed by tank, tübingen strain, danio rerio, city of eugene, intestine)2025-12-28v41 / 5pendingNo
2071gpt-5Host-associated vs environmental microbiomes at adult stage (75 dpf gut vs tank water) ( high in primary immunodeficiency disease rag1 mutant wild type co-housed by tank tübingen strain danio rerio intestine compared to aquatic environment culturing environment aquatic metagenome in aquarium 75 dpf united states of america city of eugene )2025-12-28v41 / 6pendingNo
2071gpt-5Adult wild-type (Tubingen) zebrafish intestinal samples (75 dpf) + Adult rag1 mutant zebrafish intestinal samples (75 dpf) (dominant , aquarium, primary immunodeficiency disease, rag1 mutant, wild type, 75 dpf, united states of america, co-housed by tank, tübingen strain, danio rerio, city of eugene, intestine)2025-12-28v41 / 9pendingNo
2071gpt-5Larval zebrafish intestinal samples (9 dpf) (common , 9 dpf, aquarium, united states of america, larva, danio rerio, larval stage, city of eugene, intestine)2025-12-28v41 / 10pendingNo
2071gpt-5Larval zebrafish intestinal samples (9 dpf) (dominant , 9 dpf, aquarium, united states of america, larva, danio rerio, larval stage, city of eugene, intestine)2025-12-28v41 / 13pendingNo
2071gpt-5Tank water samples at 75 dpf (dominant , aquatic metagenome, aquarium, aquatic environment, 75 dpf, united states of america, city of eugene, culturing environment)2025-12-28v41 / 16pendingNo
2071gpt-5Tank water samples at 9 dpf (dominant , aquatic metagenome, 9 dpf, aquarium, , united states of america, city of eugene, culturing environment)2025-12-28v41 / 20pendingNo
2071gpt-5Host-associated vs environmental microbiomes at larval stage (9 dpf gut vs tank water) ( high in larval stage intestine danio rerio larva compared to aquatic environment culturing environment aquatic metagenome in 9 dpf aquarium united states of america city of eugene )2025-12-28v41 / 40pendingNo
2071gpt-5Tank water samples at 9 dpf (common , aquatic metagenome, 9 dpf, aquarium, , united states of america, city of eugene, culturing environment)2025-12-28v41 / 59pendingNo
2071gpt-5Tank water samples at 75 dpf (common , aquatic metagenome, aquarium, aquatic environment, 75 dpf, united states of america, city of eugene, culturing environment)2025-12-28v41 / 95pendingNo
2071gpt-5Environmental microbiome maturation in the tank (9 dpf vs 75 dpf water) ( high in 75 dpf compared to 9 dpf in aquatic metagenome aquarium aquatic environment united states of america city of eugene culturing environment )2025-12-28v41 / 136pendingNo
2071gpt-5Environmental microbiome maturation in the tank (9 dpf vs 75 dpf water) ( high in 9 dpf compared to 75 dpf in aquatic metagenome aquarium aquatic environment united states of america city of eugene culturing environment )2025-12-28v41 / 148pendingNo
2071gpt-5Ontogeny of the zebrafish gut microbiome (adult wild-type 75 dpf vs larval 9 dpf) ( high in primary immunodeficiency disease rag1 mutant wild type 75 dpf co-housed by tank tübingen strain compared to larval stage 9 dpf larva in aquarium united states of america danio rerio city of eugene intestine )2025-12-28v41 / 211pendingNo
2071gpt-5Host-associated vs environmental microbiomes at adult stage (75 dpf gut vs tank water) ( high in aquatic environment culturing environment aquatic metagenome compared to primary immunodeficiency disease rag1 mutant wild type co-housed by tank tübingen strain danio rerio intestine in aquarium 75 dpf united states of america city of eugene )2025-12-28v41 / 280pendingNo
2071gpt-5Host-associated vs environmental microbiomes at larval stage (9 dpf gut vs tank water) ( high in aquatic environment culturing environment aquatic metagenome compared to larval stage intestine danio rerio larva in 9 dpf aquarium united states of america city of eugene )2025-12-28v41 / 294pendingNo
2071gpt-5Ontogeny of the zebrafish gut microbiome (adult wild-type 75 dpf vs larval 9 dpf) ( high in larval stage 9 dpf larva compared to primary immunodeficiency disease rag1 mutant wild type 75 dpf co-housed by tank tübingen strain in aquarium united states of america danio rerio city of eugene intestine )2025-12-28v41 / 331pendingNo

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