Experiment ID: 2061

Field Description
namegut microbiome and dietary patterns in different saudi populations and monkeys (5006041) - gpt-5
proj_id5006041
sraprjeb9815
date_of_upload28/12/2025 04:38
doi10.1038/srep32191
modelgpt-5
dbbact_id1056
dbbact_linkhttps://dbbact.org/exp_info/1056
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
saudi arabia0.500000
bedouin0.384615
makkah province0.333333
primates0.333333
fermented milk0.333333
fermented corn0.333333
LOWER IN urban biome0.315789
urban biome0.277778
western diet0.277778
LOWER IN bedouin0.272727
LOWER IN makkah province0.222222
LOWER IN primates0.222222
LOWER IN fermented milk0.222222
LOWER IN western diet0.214286
LOWER IN homo sapiens0.200000
LOWER IN fermented corn0.200000
LOWER IN human adult stage0.181818
LOWER IN farm0.166667
male organism0.095238
LOWER IN wild0.086957
LOWER IN female organism0.080000
female organism0.057143
LOWER IN feces0.052632
wild0.048780
human adult stage0.044444
farm0.042553
homo sapiens0.005155
feces0.004573
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN urban biome1.000000
LOWER IN makkah province1.000000
LOWER IN primates1.000000
LOWER IN fermented milk1.000000
makkah province0.500000
primates0.500000
LOWER IN bedouin0.500000
LOWER IN homo sapiens0.500000
bedouin0.500000
fermented milk0.500000
fermented corn0.500000
LOWER IN fermented corn0.500000
LOWER IN human adult stage0.333333
saudi arabia0.333333
LOWER IN western diet0.250000
urban biome0.250000
western diet0.250000
LOWER IN farm0.250000
LOWER IN female organism0.111111
LOWER IN wild0.066667
male organism0.058824
female organism0.052632
LOWER IN feces0.033333
wild0.027027
farm0.023256
human adult stage0.023256
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
saudi arabia1.000000
feces0.750000
human adult stage0.500000
homo sapiens0.500000
urban biome0.312500
western diet0.312500
bedouin0.312500
jeddah0.312500
rural area0.312500
governorate of al-taif0.250000
wild0.250000
farm0.250000
landfill0.250000
makkah province0.250000
primates0.250000
papio hamadryas0.250000
male organism0.250000
food sample0.250000
millet flour0.250000
fermented milk0.250000
fermented corn0.250000
bedouin diet0.250000
lohoh0.250000
LOWER IN urban biome0.187500
LOWER IN western diet0.187500
LOWER IN bedouin0.187500
LOWER IN jeddah0.187500
LOWER IN rural area0.187500
LOWER IN human adult stage0.125000
LOWER IN homo sapiens0.125000
LOWER IN governorate of al-taif0.125000
LOWER IN wild0.125000
LOWER IN farm0.125000
LOWER IN landfill0.125000
LOWER IN makkah province0.125000
LOWER IN primates0.125000
LOWER IN papio hamadryas0.125000
LOWER IN feces0.125000
LOWER IN food sample0.125000
LOWER IN millet flour0.125000
LOWER IN fermented milk0.125000
LOWER IN fermented corn0.125000
LOWER IN bedouin diet0.125000
LOWER IN lohoh0.125000
female organism0.062500
LOWER IN female organism0.062500
Number of experiments associating the term to the sequence
TermScore
governorate of al-taif1.000000
wild1.000000
farm1.000000
landfill1.000000
makkah province1.000000
primates1.000000
papio hamadryas1.000000
LOWER IN human adult stage1.000000
LOWER IN urban biome1.000000
LOWER IN western diet1.000000
LOWER IN bedouin1.000000
LOWER IN jeddah1.000000
LOWER IN rural area1.000000
LOWER IN homo sapiens1.000000
saudi arabia1.000000
feces1.000000
human adult stage1.000000
urban biome1.000000
western diet1.000000
bedouin1.000000
jeddah1.000000
rural area1.000000
homo sapiens1.000000
LOWER IN governorate of al-taif1.000000
LOWER IN wild1.000000
LOWER IN farm1.000000
LOWER IN landfill1.000000
LOWER IN makkah province1.000000
LOWER IN primates1.000000
LOWER IN papio hamadryas1.000000
female organism1.000000
male organism1.000000
LOWER IN female organism1.000000
food sample1.000000
millet flour1.000000
fermented milk1.000000
fermented corn1.000000
bedouin diet1.000000
lohoh1.000000
LOWER IN feces1.000000
LOWER IN food sample1.000000
LOWER IN millet flour1.000000
LOWER IN fermented milk1.000000
LOWER IN fermented corn1.000000
LOWER IN bedouin diet1.000000
LOWER IN lohoh1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2061gpt-5Human gut vs fermented food microbiomes (potential diet–microbe reservoir comparison; 16S amplicon) ( high in human adult stage urban biome western diet bedouin jeddah rural area homo sapiens feces compared to food sample millet flour fermented milk fermented corn bedouin diet lohoh in saudi arabia )2025-12-28v31 / 6pendingNo
2061gpt-5Baboon stool samples (16S amplicon) (dominant governorate of al-taif, wild, farm, papio hamadryas, landfill, makkah province, saudi arabia, primates, feces)2025-12-28v31 / 8pendingNo
2061gpt-5Urban Saudi human stool samples (16S amplicon) (dominant human adult stage, urban biome, western diet, male organism, jeddah, saudi arabia, homo sapiens, feces)2025-12-28v31 / 20pendingNo
2061gpt-5Fermented food samples (Lohoh; 16S amplicon) (dominant food sample, millet flour, fermented milk, fermented corn, bedouin diet, lohoh, saudi arabia)2025-12-28v31 / 20pendingNo
2061gpt-5Bedouin human stool samples (16S amplicon) (dominant human adult stage, bedouin, rural area, saudi arabia, homo sapiens, feces)2025-12-28v31 / 21pendingNo
2061gpt-5Urban Saudi human stool samples (16S amplicon) (common human adult stage, urban biome, western diet, male organism, jeddah, saudi arabia, homo sapiens, feces)2025-12-28v31 / 46pendingNo
2061gpt-5Fermented food samples (Lohoh; 16S amplicon) (common food sample, millet flour, fermented milk, fermented corn, bedouin diet, lohoh, saudi arabia)2025-12-28v31 / 82pendingNo
2061gpt-5Bedouin human stool samples (16S amplicon) (common human adult stage, bedouin, rural area, saudi arabia, homo sapiens, feces)2025-12-28v31 / 115pendingNo
2061gpt-5Human gut vs fermented food microbiomes (potential diet–microbe reservoir comparison; 16S amplicon) ( high in food sample millet flour fermented milk fermented corn bedouin diet lohoh compared to human adult stage urban biome western diet bedouin jeddah rural area homo sapiens feces in saudi arabia )2025-12-28v31 / 140pendingNo
2061gpt-5Baboon stool samples (16S amplicon) (common governorate of al-taif, wild, farm, papio hamadryas, landfill, makkah province, saudi arabia, primates, feces)2025-12-28v31 / 145pendingNo
2061gpt-5Non-human primate gut vs fermented food microbiomes (16S amplicon) ( high in governorate of al-taif wild farm papio hamadryas landfill makkah province primates feces compared to food sample millet flour fermented milk fermented corn bedouin diet lohoh in saudi arabia )2025-12-28v31 / 159pendingNo
2061gpt-5Non-human primate gut vs fermented food microbiomes (16S amplicon) ( high in food sample millet flour fermented milk fermented corn bedouin diet lohoh compared to governorate of al-taif wild farm papio hamadryas landfill makkah province primates feces in saudi arabia )2025-12-28v31 / 183pendingNo
2061gpt-5Pastoral/nomadic vs urban human gut microbiomes (Bedouin vs Urban Saudi; 16S amplicon) ( high in western diet urban biome jeddah compared to female organism rural area bedouin in human adult stage saudi arabia male organism homo sapiens feces )2025-12-28v31 / 201pendingNo
2061gpt-5Pastoral/nomadic vs urban human gut microbiomes (Bedouin vs Urban Saudi; 16S amplicon) ( high in female organism rural area bedouin compared to western diet urban biome jeddah in human adult stage saudi arabia male organism homo sapiens feces )2025-12-28v31 / 569pendingNo
2061gpt-5Human (Bedouin + Urban Saudi) vs non-human primate gut microbiomes (16S amplicon) ( high in human adult stage urban biome western diet bedouin jeddah rural area homo sapiens compared to governorate of al-taif wild farm landfill makkah province primates papio hamadryas in saudi arabia feces )2025-12-28v31 / 576pendingNo
2061gpt-5Human (Bedouin + Urban Saudi) vs non-human primate gut microbiomes (16S amplicon) ( high in governorate of al-taif wild farm landfill makkah province primates papio hamadryas compared to human adult stage urban biome western diet bedouin jeddah rural area homo sapiens in saudi arabia feces )2025-12-28v31 / 1536pendingNo

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