Experiment ID: 2054

Field Description
nameinfluence of whole-wheat consumption on fecal microbial community structure of obese diabetic mice (4768707) - gpt-5
proj_id4768707
sraprjna281761
date_of_upload28/12/2025 04:24
doi10.7717/peerj.1702
modelgpt-5
dbbact_id39
dbbact_linkhttps://dbbact.org/exp_info/39
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
whole wheat diet0.500000
diabetes mellitus0.444444
wheat0.285714
LOWER IN wheat0.250000
LOWER IN whole wheat diet0.250000
LOWER IN triticum aestivum0.250000
LOWER IN obesity0.250000
LOWER IN diabetes mellitus0.222222
triticum aestivum0.142857
obesity0.126984
male organism0.111111
mus musculus0.027027
LOWER IN control0.008850
control0.008830
united states of america0.006645
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
whole wheat diet1.000000
LOWER IN wheat0.500000
LOWER IN whole wheat diet0.500000
LOWER IN triticum aestivum0.500000
diabetes mellitus0.333333
LOWER IN diabetes mellitus0.333333
wheat0.250000
LOWER IN obesity0.200000
triticum aestivum0.090909
obesity0.066667
male organism0.058824
mus musculus0.013699
LOWER IN control0.004545
control0.004444
united states of america0.003333
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
obesity1.333333
laboratory facility1.000000
pullman1.000000
united states of america1.000000
mus musculus1.000000
male organism1.000000
feces1.000000
diabetes mellitus0.666667
control0.666667
wheat0.333333
whole wheat diet0.333333
triticum aestivum0.333333
lean phenotype0.333333
LOWER IN obesity0.333333
LOWER IN control0.166667
LOWER IN lean phenotype0.166667
LOWER IN wheat0.166667
LOWER IN whole wheat diet0.166667
LOWER IN triticum aestivum0.166667
LOWER IN diabetes mellitus0.166667
Number of experiments associating the term to the sequence
TermScore
laboratory facility1.000000
pullman1.000000
wheat1.000000
united states of america1.000000
obesity1.000000
whole wheat diet1.000000
diabetes mellitus1.000000
mus musculus1.000000
triticum aestivum1.000000
male organism1.000000
feces1.000000
control1.000000
lean phenotype1.000000
LOWER IN control1.000000
LOWER IN lean phenotype1.000000
LOWER IN wheat1.000000
LOWER IN whole wheat diet1.000000
LOWER IN triticum aestivum1.000000
LOWER IN diabetes mellitus1.000000
LOWER IN obesity1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2054gpt-5Whole-wheat–supplemented obese mouse fecal samples (dominant laboratory facility, pullman, wheat, united states of america, obesity, whole wheat diet, diabetes mellitus, mus musculus, triticum aestivum, obesity, male organism, feces)2025-12-28v41 / 16pendingNo
2054gpt-5Lean control mouse fecal samples (dominant pullman, laboratory facility, united states of america, lean phenotype, mus musculus, control, male organism, feces)2025-12-28v41 / 17pendingNo
2054gpt-5Obese control mouse fecal samples (dominant laboratory facility, pullman, united states of america, mus musculus, diabetes mellitus, control, obesity, male organism, feces, obesity)2025-12-28v41 / 20pendingNo
2054gpt-5Obesity vs lean in mouse fecal microbiome ( high in lean phenotype compared to obesity obesity diabetes mellitus in united states of america feces male organism laboratory facility mus musculus pullman control )2025-12-28v41 / 22pendingNo
2054gpt-5Diet-supplemented obese vs lean controls ( high in control lean phenotype compared to wheat whole wheat diet diabetes mellitus obesity obesity triticum aestivum in united states of america feces male organism laboratory facility mus musculus pullman )2025-12-28v41 / 35pendingNo
2054gpt-5Whole-wheat supplementation effect in obese mice ( high in wheat whole wheat diet triticum aestivum compared to control in feces united states of america male organism laboratory facility mus musculus diabetes mellitus pullman obesity obesity )2025-12-28v41 / 71pending1
2054gpt-5Obesity vs lean in mouse fecal microbiome ( high in obesity obesity diabetes mellitus compared to lean phenotype in united states of america feces male organism laboratory facility mus musculus pullman control )2025-12-28v41 / 78pendingNo
2054gpt-5Whole-wheat supplementation effect in obese mice ( high in control compared to wheat whole wheat diet triticum aestivum in feces united states of america male organism laboratory facility mus musculus diabetes mellitus pullman obesity obesity )2025-12-28v41 / 81pendingNo
2054gpt-5Diet-supplemented obese vs lean controls ( high in wheat whole wheat diet diabetes mellitus obesity obesity triticum aestivum compared to control lean phenotype in united states of america feces male organism laboratory facility mus musculus pullman )2025-12-28v41 / 103pendingNo
2054gpt-5Lean control mouse fecal samples (common pullman, laboratory facility, united states of america, lean phenotype, mus musculus, control, male organism, feces)2025-12-28v41 / 120pendingNo
2054gpt-5Obese control mouse fecal samples (common laboratory facility, pullman, united states of america, mus musculus, diabetes mellitus, control, obesity, male organism, feces, obesity)2025-12-28v41 / 160pendingNo
2054gpt-5Whole-wheat–supplemented obese mouse fecal samples (common laboratory facility, pullman, wheat, united states of america, obesity, whole wheat diet, diabetes mellitus, mus musculus, triticum aestivum, obesity, male organism, feces)2025-12-28v41 / 179pendingNo

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