Experiment ID: 2010

Field Description
nameelectronic cigarette use promotes a unique periodontal microbiome (8903898) - gpt-5
proj_id8903898
sraprjna771337
date_of_upload10/12/2025 18:18
doi10.1128/mbio.00075-22
modelgpt-5
dbbact_id930
dbbact_linkhttps://dbbact.org/exp_info/930
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
gingiva0.666667
site 20.500000
LOWER IN site 20.285714
cigarette smoking0.285714
non-smoker0.285714
subgingival dental plaque0.181818
state of new york0.133333
periodontitis0.117647
human adult stage0.045455
united states of america0.006645
homo sapiens0.005168
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN site 21.000000
gingiva0.500000
site 20.500000
cigarette smoking0.166667
non-smoker0.166667
subgingival dental plaque0.100000
state of new york0.071429
periodontitis0.062500
human adult stage0.023256
united states of america0.003333
homo sapiens0.002591
Fraction of annotations for the query sequences containing the term
TermScore
alveolar bone1.000000
cigarette smoking1.000000
gingiva1.000000
human adult stage1.000000
subgingival dental plaque1.000000
dental clinic1.000000
homo sapiens1.000000
periodontitis1.000000
state of new york1.000000
longitudinal study1.000000
electronic cigarette use1.000000
nicotine1.000000
non-smoker1.000000
united states of america1.000000
visit 10.500000
site 20.500000
LOWER IN site 20.166667
LOWER IN visit 10.166667
Number of experiments associating the term to the sequence
TermScore
visit 11.000000
LOWER IN site 21.000000
alveolar bone1.000000
cigarette smoking1.000000
gingiva1.000000
human adult stage1.000000
subgingival dental plaque1.000000
dental clinic1.000000
homo sapiens1.000000
periodontitis1.000000
state of new york1.000000
longitudinal study1.000000
electronic cigarette use1.000000
nicotine1.000000
non-smoker1.000000
united states of america1.000000
site 21.000000
LOWER IN visit 11.000000
Exp. ID User ID Description Date Region Sequences Status Flag
2010gpt-5Human subgingival plaque samples (Visit 1) (dominant alveolar bone, visit 1, cigarette smoking, gingiva, human adult stage, subgingival dental plaque, dental clinic, homo sapiens, periodontitis, state of new york, longitudinal study, electronic cigarette use, nicotine, non-smoker, united states of america)2025-12-10v31 / 5pendingNo
2010gpt-5Human subgingival plaque samples (Visit 2) (dominant alveolar bone, cigarette smoking, site 2, gingiva, human adult stage, subgingival dental plaque, dental clinic, homo sapiens, periodontitis, state of new york, longitudinal study, electronic cigarette use, nicotine, non-smoker, united states of america)2025-12-10v31 / 13pendingNo
2010gpt-5Human subgingival plaque samples (Visit 2) (common alveolar bone, cigarette smoking, site 2, gingiva, human adult stage, subgingival dental plaque, dental clinic, homo sapiens, periodontitis, state of new york, longitudinal study, electronic cigarette use, nicotine, non-smoker, united states of america)2025-12-10v31 / 66pendingNo
2010gpt-5Temporal stability of human subgingival plaque microbiome (Visit 1 vs Visit 2) ( high in site 2 compared to visit 1 in alveolar bone cigarette smoking gingiva human adult stage subgingival dental plaque dental clinic homo sapiens periodontitis state of new york longitudinal study electronic cigarette use nicotine non-smoker united states of america )2025-12-10v31 / 119pendingNo
2010gpt-5Human subgingival plaque samples (Visit 1) (common alveolar bone, visit 1, cigarette smoking, gingiva, human adult stage, subgingival dental plaque, dental clinic, homo sapiens, periodontitis, state of new york, longitudinal study, electronic cigarette use, nicotine, non-smoker, united states of america)2025-12-10v31 / 178pendingNo
2010gpt-5Temporal stability of human subgingival plaque microbiome (Visit 1 vs Visit 2) ( high in visit 1 compared to site 2 in alveolar bone cigarette smoking gingiva human adult stage subgingival dental plaque dental clinic homo sapiens periodontitis state of new york longitudinal study electronic cigarette use nicotine non-smoker united states of america )2025-12-10v31 / 5506pendingNo

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