Experiment ID: 1991

Field Description
namecontext-dependent dynamics lead to the assembly of functionally distinct microbial communities (7080782) - gpt-5
proj_id7080782
sraprjna559886
date_of_upload10/12/2025 13:19
doi10.1038/s41467-020-15169-0
modelgpt-5
dbbact_id614
dbbact_linkhttps://dbbact.org/exp_info/614
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
sarracenia purpurea0.666667
harvard forest0.666667
microbial mat0.400000
filtered 2.7um0.400000
filtered 0.2um0.285714
commonwealth of massachusetts0.200000
united states of america0.006645
Fraction of dbbact annotations with this term covered by the query
TermScore
sarracenia purpurea0.500000
harvard forest0.500000
microbial mat0.250000
filtered 2.7um0.250000
filtered 0.2um0.166667
commonwealth of massachusetts0.111111
united states of america0.003333
Fraction of annotations for the query sequences containing the term
TermScore
chitin1.000000
freshwater environment1.000000
chitosan1.000000
sarracenia purpurea1.000000
laboratory environment1.000000
commonwealth of massachusetts1.000000
bacteria latreille et al. 18251.000000
unfiltered1.000000
harvard forest1.000000
microbial mat1.000000
united states of america1.000000
microbial community1.000000
bacteria1.000000
filtered 2.7um1.000000
cricket medium1.000000
filtered 0.2um1.000000
bodily fluid1.000000
microcosm1.000000
early post-adjustment0.500000
near-equilibrium0.500000
LOWER IN near-equilibrium0.166667
LOWER IN early post-adjustment0.166667
Number of experiments associating the term to the sequence
TermScore
chitin1.000000
freshwater environment1.000000
chitosan1.000000
sarracenia purpurea1.000000
laboratory environment1.000000
commonwealth of massachusetts1.000000
early post-adjustment1.000000
bacteria latreille et al. 18251.000000
unfiltered1.000000
harvard forest1.000000
microbial mat1.000000
united states of america1.000000
microbial community1.000000
bacteria1.000000
filtered 2.7um1.000000
cricket medium1.000000
filtered 0.2um1.000000
bodily fluid1.000000
microcosm1.000000
LOWER IN near-equilibrium1.000000
near-equilibrium1.000000
LOWER IN early post-adjustment1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1991gpt-5Succession over time in bacterial-only microcosms (Day 3 vs Day 63) ( high in near-equilibrium compared to early post-adjustment in freshwater environment unfiltered united states of america chitin bacteria harvard forest chitosan filtered 2.7um cricket medium filtered 0.2um sarracenia purpurea bodily fluid laboratory environment microbial mat commonwealth of massachusetts microcosm microbial community bacteria latreille et al. 1825 )2025-12-10v41 / 7pendingNo
1991gpt-5Day 3 filtered microcosm communities (bacterial-only, early post-adjustment) + Day 3 unfiltered microcosm communities (whole community, early post-adjustment) (dominant chitin, freshwater environment, chitosan, sarracenia purpurea, laboratory environment, commonwealth of massachusetts, early post-adjustment, bacteria latreille et al. 1825, unfiltered, harvard forest, microbial mat, united states of america, microbial community, bacteria, filtered 2.7um, cricket medium, filtered 0.2um, bodily fluid, microcosm)2025-12-10v41 / 20pendingNo
1991gpt-5Day 63 filtered microcosm communities (bacterial-only, near-equilibrium) + Day 63 unfiltered microcosm communities (whole community, near-equilibrium) (dominant chitin, freshwater environment, chitosan, sarracenia purpurea, laboratory environment, commonwealth of massachusetts, bacteria latreille et al. 1825, unfiltered, harvard forest, microbial mat, united states of america, microbial community, near-equilibrium, bacteria, filtered 2.7um, cricket medium, filtered 0.2um, bodily fluid, microcosm)2025-12-10v41 / 21pendingNo
1991gpt-5Day 63 filtered microcosm communities (bacterial-only, near-equilibrium) + Day 63 unfiltered microcosm communities (whole community, near-equilibrium) (common chitin, freshwater environment, chitosan, sarracenia purpurea, laboratory environment, commonwealth of massachusetts, bacteria latreille et al. 1825, unfiltered, harvard forest, microbial mat, united states of america, microbial community, near-equilibrium, bacteria, filtered 2.7um, cricket medium, filtered 0.2um, bodily fluid, microcosm)2025-12-10v41 / 22pendingNo
1991gpt-5Succession over time in bacterial-only microcosms (Day 3 vs Day 63) ( high in early post-adjustment compared to near-equilibrium in freshwater environment unfiltered united states of america chitin bacteria harvard forest chitosan filtered 2.7um cricket medium filtered 0.2um sarracenia purpurea bodily fluid laboratory environment microbial mat commonwealth of massachusetts microcosm microbial community bacteria latreille et al. 1825 )2025-12-10v41 / 23pendingNo
1991gpt-5Day 3 filtered microcosm communities (bacterial-only, early post-adjustment) + Day 3 unfiltered microcosm communities (whole community, early post-adjustment) (common chitin, freshwater environment, chitosan, sarracenia purpurea, laboratory environment, commonwealth of massachusetts, early post-adjustment, bacteria latreille et al. 1825, unfiltered, harvard forest, microbial mat, united states of america, microbial community, bacteria, filtered 2.7um, cricket medium, filtered 0.2um, bodily fluid, microcosm)2025-12-10v41 / 31pendingNo

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