Experiment ID: 1990

Field Description
namecftr dysregulation drives active selection of the gut microbiome (6994172) - gpt-5
proj_id6994172
sraprjeb32648
date_of_upload10/12/2025 13:16
doi10.1371/journal.ppat.1008251
modelgpt-5
dbbact_id619
dbbact_linkhttps://dbbact.org/exp_info/619
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
seattle0.666667
small intestine0.285714
cystic fibrosis0.250000
LOWER IN cystic fibrosis0.250000
mus musculus0.027027
LOWER IN control0.008850
control0.008811
united states of america0.006645
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
seattle0.500000
LOWER IN cystic fibrosis0.500000
cystic fibrosis0.166667
small intestine0.166667
mus musculus0.013699
LOWER IN control0.004545
control0.004444
united states of america0.003333
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
laboratory facility1.000000
mus musculus1.000000
mesenteric lymph node1.000000
spleen1.000000
small intestine1.000000
specific pathogen free1.000000
feces1.000000
gnotobiotic isolator1.000000
germ-free1.000000
seattle1.000000
cecum mucosa1.000000
fecal microbiota transplantation1.000000
cystic fibrosis0.500000
cftr mutation0.500000
control0.500000
LOWER IN control0.166667
LOWER IN cystic fibrosis0.166667
LOWER IN cftr mutation0.166667
Number of experiments associating the term to the sequence
TermScore
united states of america1.000000
cystic fibrosis1.000000
laboratory facility1.000000
mus musculus1.000000
mesenteric lymph node1.000000
spleen1.000000
cftr mutation1.000000
small intestine1.000000
specific pathogen free1.000000
feces1.000000
gnotobiotic isolator1.000000
germ-free1.000000
seattle1.000000
cecum mucosa1.000000
fecal microbiota transplantation1.000000
control1.000000
LOWER IN control1.000000
LOWER IN cystic fibrosis1.000000
LOWER IN cftr mutation1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1990gpt-5Cystic fibrosis (CF) vs non-CF mouse gut microbiome ( high in control compared to cystic fibrosis cftr mutation in united states of america laboratory facility mus musculus mesenteric lymph node spleen small intestine specific pathogen free feces gnotobiotic isolator germ-free seattle cecum mucosa fecal microbiota transplantation )2025-12-10v31 / 1pendingNo
1990gpt-5CF mouse gut samples (dominant united states of america, cystic fibrosis, laboratory facility, mus musculus, mesenteric lymph node, spleen, cftr mutation, small intestine, specific pathogen free, feces, gnotobiotic isolator, germ-free, seattle, cecum mucosa, fecal microbiota transplantation)2025-12-10v31 / 20pendingNo
1990gpt-5Non-CF mouse gut samples (dominant united states of america, laboratory facility, mus musculus, mesenteric lymph node, control, spleen, small intestine, specific pathogen free, feces, gnotobiotic isolator, germ-free, seattle, cecum mucosa, fecal microbiota transplantation)2025-12-10v31 / 22pendingNo
1990gpt-5Cystic fibrosis (CF) vs non-CF mouse gut microbiome ( high in cystic fibrosis cftr mutation compared to control in united states of america laboratory facility mus musculus mesenteric lymph node spleen small intestine specific pathogen free feces gnotobiotic isolator germ-free seattle cecum mucosa fecal microbiota transplantation )2025-12-10v31 / 39pendingNo
1990gpt-5Non-CF mouse gut samples (common united states of america, laboratory facility, mus musculus, mesenteric lymph node, control, spleen, small intestine, specific pathogen free, feces, gnotobiotic isolator, germ-free, seattle, cecum mucosa, fecal microbiota transplantation)2025-12-10v31 / 42pendingNo
1990gpt-5CF mouse gut samples (common united states of america, cystic fibrosis, laboratory facility, mus musculus, mesenteric lymph node, spleen, cftr mutation, small intestine, specific pathogen free, feces, gnotobiotic isolator, germ-free, seattle, cecum mucosa, fecal microbiota transplantation)2025-12-10v31 / 64pendingNo

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