Experiment ID: 1982

Field Description
namedefining dysbiosis in patients with urolithiasis (6443657) - gpt-5
proj_id6443657
srasrp140641
date_of_upload10/12/2025 04:29
doi10.1038/s41598-019-41977-6
modelgpt-5
dbbact_id516
dbbact_linkhttps://dbbact.org/exp_info/516
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
nephrolithiasis0.500000
urine0.285714
LOWER IN urine0.250000
LOWER IN nephrolithiasis0.250000
LOWER IN feces0.055556
human adult stage0.045455
control0.008850
united states of america0.006645
homo sapiens0.005168
feces0.004566
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN urine0.500000
LOWER IN nephrolithiasis0.500000
nephrolithiasis0.500000
urine0.200000
LOWER IN feces0.033333
human adult stage0.023256
control0.004444
united states of america0.003333
homo sapiens0.002591
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
kidney disease1.000000
human adult stage1.000000
control1.000000
urinary system disease1.000000
homo sapiens1.000000
disease of genitourinary system1.000000
city of cleveland1.000000
patient1.000000
feces0.500000
renal system0.500000
urine0.500000
kidney0.500000
genitourinary system0.500000
urine material0.500000
nephrolithiasis0.500000
LOWER IN renal system0.166667
LOWER IN urine0.166667
LOWER IN kidney0.166667
LOWER IN genitourinary system0.166667
LOWER IN urine material0.166667
LOWER IN nephrolithiasis0.166667
LOWER IN feces0.166667
Number of experiments associating the term to the sequence
TermScore
feces1.000000
LOWER IN renal system1.000000
LOWER IN urine1.000000
LOWER IN kidney1.000000
LOWER IN genitourinary system1.000000
LOWER IN urine material1.000000
LOWER IN nephrolithiasis1.000000
united states of america1.000000
kidney disease1.000000
human adult stage1.000000
control1.000000
urinary system disease1.000000
homo sapiens1.000000
disease of genitourinary system1.000000
city of cleveland1.000000
patient1.000000
renal system1.000000
urine1.000000
kidney1.000000
genitourinary system1.000000
urine material1.000000
nephrolithiasis1.000000
LOWER IN feces1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1982gpt-5Urine microbiome of USD patients + Urine microbiome of healthy controls + Kidney stone samples from USD patients (common renal system, urine, kidney disease, united states of america, human adult stage, control, kidney, urinary system disease, genitourinary system, homo sapiens, urine material, disease of genitourinary system, nephrolithiasis, city of cleveland, patient)2025-12-10v41 / 6pendingNo
1982gpt-5Urine microbiome of USD patients + Urine microbiome of healthy controls + Kidney stone samples from USD patients (dominant renal system, urine, kidney disease, united states of america, human adult stage, control, kidney, urinary system disease, genitourinary system, homo sapiens, urine material, disease of genitourinary system, nephrolithiasis, city of cleveland, patient)2025-12-10v41 / 15pendingNo
1982gpt-5Stool microbiome of USD patients + Stool microbiome of healthy controls (dominant united states of america, kidney disease, human adult stage, control, urinary system disease, homo sapiens, disease of genitourinary system, city of cleveland, feces, patient)2025-12-10v41 / 19pendingNo
1982gpt-5Stool microbiome of USD patients + Stool microbiome of healthy controls (common united states of america, kidney disease, human adult stage, control, urinary system disease, homo sapiens, disease of genitourinary system, city of cleveland, feces, patient)2025-12-10v41 / 77pendingNo
1982gpt-5Body site specificity in USD: urine vs stool ( high in renal system urine kidney genitourinary system urine material nephrolithiasis compared to feces in united states of america kidney disease human adult stage control urinary system disease homo sapiens disease of genitourinary system city of cleveland patient )2025-12-10v41 / 97pendingNo
1982gpt-5Body site specificity in USD: urine vs stool ( high in feces compared to renal system urine kidney genitourinary system urine material nephrolithiasis in united states of america kidney disease human adult stage control urinary system disease homo sapiens disease of genitourinary system city of cleveland patient )2025-12-10v41 / 762pendingNo

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