Experiment ID: 1975

Field Description
namesalt-responsive gut commensal modulates th17 axis and disease (6070150) - gpt-5
proj_id6070150
sraprjna400793
date_of_upload10/12/2025 04:13
doi10.1038/nature24628
modelgpt-5
dbbact_id248
dbbact_linkhttps://dbbact.org/exp_info/248
needs_manual_reviewtrue

Annotations for experiment:

term enrichment score
TermScore
timepoint0.363636
early timepoint0.307692
LOWER IN timepoint0.285714
normal diet0.250000
LOWER IN early timepoint0.222222
male organism0.111111
diet0.080000
germany0.076923
mus musculus0.027027
research facility0.010417
control0.008850
feces0.004577
Fraction of dbbact annotations with this term covered by the query
TermScore
LOWER IN timepoint0.500000
timepoint0.333333
early timepoint0.250000
LOWER IN early timepoint0.250000
normal diet0.142857
male organism0.058824
diet0.041667
germany0.040000
mus musculus0.013699
research facility0.005236
control0.004444
feces0.002294
Fraction of annotations for the query sequences containing the term
TermScore
berlin1.000000
sodium chloride1.000000
normal diet1.000000
male organism1.000000
germany1.000000
mus musculus1.000000
control1.000000
research facility1.000000
diet1.000000
day +141.000000
feces1.000000
days +1 to +30.400000
recovery phase0.400000
high salt diet0.400000
timepoint0.400000
days +15 to +280.400000
baseline0.400000
hsd cohort0.400000
early timepoint0.400000
day -10.400000
post-treatment recovery0.400000
day -20.400000
LOWER IN day -10.200000
LOWER IN post-treatment recovery0.200000
LOWER IN timepoint0.200000
LOWER IN days +1 to +30.200000
LOWER IN early timepoint0.200000
LOWER IN recovery phase0.200000
LOWER IN days +15 to +280.200000
LOWER IN baseline0.200000
LOWER IN day -20.200000
LOWER IN high salt diet0.200000
LOWER IN hsd cohort0.200000
Number of experiments associating the term to the sequence
TermScore
berlin1.000000
sodium chloride1.000000
normal diet1.000000
male organism1.000000
germany1.000000
mus musculus1.000000
control1.000000
research facility1.000000
diet1.000000
day +141.000000
feces1.000000
days +1 to +31.000000
recovery phase1.000000
high salt diet1.000000
timepoint1.000000
days +15 to +281.000000
baseline1.000000
hsd cohort1.000000
early timepoint1.000000
day -11.000000
post-treatment recovery1.000000
day -21.000000
LOWER IN day -11.000000
LOWER IN post-treatment recovery1.000000
LOWER IN timepoint1.000000
LOWER IN days +1 to +31.000000
LOWER IN early timepoint1.000000
LOWER IN recovery phase1.000000
LOWER IN days +15 to +281.000000
LOWER IN baseline1.000000
LOWER IN day -21.000000
LOWER IN high salt diet1.000000
LOWER IN hsd cohort1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
1975gpt-5High-salt diet at day +14 vs normal-salt control at day +14 ( high in compared to day -1 post-treatment recovery timepoint days +1 to +3 early timepoint recovery phase days +15 to +28 baseline day -2 high salt diet hsd cohort in berlin sodium chloride normal diet male organism germany mus musculus control research facility diet day +14 feces )2025-12-10v41 / 17pendingNo
1975gpt-5Normal-salt control mouse fecal samples (baseline day -1) + Pre-HSD baseline fecal samples (HSD cohort, day -2) + High-salt diet mouse fecal samples (days +1 to +3) + High-salt diet mouse fecal samples (day +14) + Post-HSD recovery on NSD (HSD cohort, days +15 to +28) (dominant sodium chloride, days +1 to +3, recovery phase, control, high salt diet, feces, timepoint, normal diet, male organism, days +15 to +28, baseline, hsd cohort, diet, day +14, berlin, germany, early timepoint, mus musculus, day -1, post-treatment recovery, day -2, research facility)2025-12-10v41 / 22pendingNo
1975gpt-5Normal-salt control mouse fecal samples (day +14) (dominant berlin, sodium chloride, normal diet, male organism, germany, mus musculus, control, research facility, diet, day +14, feces)2025-12-10v41 / 26pendingNo
1975gpt-5Normal-salt control mouse fecal samples (baseline day -1) + Pre-HSD baseline fecal samples (HSD cohort, day -2) + High-salt diet mouse fecal samples (days +1 to +3) + High-salt diet mouse fecal samples (day +14) + Post-HSD recovery on NSD (HSD cohort, days +15 to +28) (common sodium chloride, days +1 to +3, recovery phase, control, high salt diet, feces, timepoint, normal diet, male organism, days +15 to +28, baseline, hsd cohort, diet, day +14, berlin, germany, early timepoint, mus musculus, day -1, post-treatment recovery, day -2, research facility)2025-12-10v41 / 161pendingNo
1975gpt-5Normal-salt control mouse fecal samples (day +14) (common berlin, sodium chloride, normal diet, male organism, germany, mus musculus, control, research facility, diet, day +14, feces)2025-12-10v41 / 209pendingNo

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